MmuEX6043898 @ mm9

Exon Skipping

Gene

ENSMUSG00000031079 | Zfp300

Description

zinc finger protein 300 [Source:MGI Symbol;Acc:MGI:3045326]

Coordinates

chrX:20656300-20661481:-

Coord C1 exon

chrX:20661342-20661481

Coord A exon

chrX:20661034-20661126

Coord C2 exon

chrX:20656300-20660417

Length

93 bp

Sequences

Splice sites

3' ss Seq

TCTATAATTTCTCATTACAGGGT

3' ss Score

8.26

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

Exon sequences

Seq C1 exon

TATGCAATTACAGGAATCAGTGTCATTTGAGGATGTGTCTGTGGACTTCACTCAGGAAGAATGGAATCAACTGGACCCTATTCAGAGGAGCCTATACAGAGATGTGATGCTAGAGAACTATAGTCATCTTGTCTCTCTGG

Seq A exon

GGTATCCTATTACCAAACCAGAAGTGATCGCCTCTTTAGAGAAAGGAGTCCTTGGGATAATAAAGAGAGAAATTCCAAGTTCAAGTTGCACAG

Seq C2 exon

AAGATGGTCAAGCTGAATACAACTTGGCATGGCATCAGAAAAATCAAAATATGCACCTGGAGCAAGCTATATCCATTATTGAGAAAAATGTAACTGAAGAAAGAAGTTATGAATATGATGGATTTGTAAGCCCACTTTCTCAGAGCACATGGGTAGTTTCTTCAGGACCCACACCCTATATGAATAACTCATTTGGAGAAAGTATTAAAAATAATTTAGGTTTAGTCAATCCTAGTAGTATGAGCTTTGCAGCTCAGGAATGTTATGAATGTAATAGATGTAGGAAATTATTAATTCCTGGCAGACATGAGATAAGTGACAGAATGAAATCCCAGGAGCATAATATGTTTGGAAAAGAGCATATTTATAACTTTGTTCAGCATGACTTGACTCAACTTGGAGACAAAACCTATGAATGTCCTGAGTGTAGAATAACCCTTAGCCCAAGTTCATTCCTTGTTGTTCATCAGATCACTCACATAGGAGAAAAGCCTTATGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000031079-'3-5,'3-4,5-5=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.092

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=87.2)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=3.3)

Main Inclusion Isoform:

ENSMUSP00000046514