BtaEX6108162 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000040381 | ZNF75A

Description

Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]

Coordinates

chr25:2754633-2761886:+

Coord C1 exon

chr25:2754633-2754759

Coord A exon

chr25:2758379-2758489

Coord C2 exon

chr25:2758672-2761886

Length

111 bp

Sequences

Splice sites

3' ss Seq

TCAGTTTTTCTGTTTCACAGCAT

3' ss Score

7.91

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

Exon sequences

Seq C1 exon

AGCTTATTGACATTTGAAGAAGTGGCCATGTATTTTTCCCAGGAAGAATGGGAGTTACTGGATCCCACTCAGAAGGCCCTCTACAATGATGTAATGCAAGAAAACTATGAGACTGTCATCTCTCTAG

Seq A exon

CATTATTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGAGAAGAGCCATGGGTTCAAAGACCCCTGGAGTTCAAGGACAGTTCTGAAGAGCTGCCTGCAG

Seq C2 exon

GGCTGAAGCTTAAAAATGACACTGAAAATATTCAGTCTCTATGTCTTTCTGACTTAGAAATACAAGCACCAGTAGCTATAGCATCAAGAAAGGCCAGATTGAAAGTTCCCCAGAAAACAATTGGTAAAGAAAATCATGGTGATGTGCATAGGGTGGGGAAATTGCACCGAGATTTTCCGGTGAAGAAAAAAAAGAAACTTTCAACCTGGAAACAAGAGCTGCTGAAACTTATGGATCTTCAGAAGAAAGAACGTGCAGCAGAAAGGCCTTTTAAATGCCAGGAATGTGGGAAAAGCTTCAGAGTTAGCTCTGACCTCATTAAACACCAGAGAGTTCACACGGAAGAGAAACCATATAAATGTCAACAATGTGATAAGAGGTTTAGGTGGAGCTCTGATCTTAATAAGCACTTAACAACACACCAAGGAATAAAACCATATAAATGCTCATGGTGTGGGAAAGGCTTCAGTCAAAAGACAAATCTCCACACACACCAAAGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000040381-'7-9,'7-7,9-9=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.026 C2=0.137

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=11.0),PF0013017=C1_1=WD(100=22.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5)

Main Inclusion Isoform:

ENSBTAP00000049954