HsaEX6100184 @ hg38
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140367420-140368659:+
Coord C1 exon
chr5:140367420-140367581
Coord A exon
chr5:140367720-140367898
Coord C2 exon
chr5:140368587-140368659
Length
179 bp
Sequences
Splice sites
3' ss Seq
GCCCCCACCACTACCTGCAGAAG
3' ss Score
5.25
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCACACTCCCTGGGCGTGGCTGGCTGGTGTCACCTTTTGGAGCCAACCCCTGGTGGTGGAGTGTGGCAGCTGCCCTGCCTGCCCTGCTGCTGTCTATCCTCATCTTCATGGACCAACAGATCACAGCAGTCATCCTCAACCGCATGGAATACAGACTGCAG
Seq A exon
AAGGGAGCTGGCTTCCACCTGGACCTCTTCTGTGTGGCTGTGCTGATGCTACTCACATCAGCGCTTGGACTGCCTTGGTATGTCTCAGCCACTGTCATCTCCCTGGCTCACATGGACAGTCTTCGGAGAGAGAGCAGAGCCTGTGCCCCCGGGGAGCGCCCCAACTTCCTGGGTATCAG
Seq C2 exon
GGAACAGAGGCTGACAGGCCTGGTGGTGTTCATCCTTACAGGAGCCTCCATCTTCCTGGCACCTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'19-24,'19-23,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.6=100)
A:
PF0095516=HCO3_cotransp=FE(11.8=100)
C2:
PF0095516=HCO3_cotransp=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTCCCTGGGCGTGG
R:
ACAGGTGCCAGGAAGATGGAG
Band lengths:
226-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains