MmuEX0043438 @ mm9
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36694936-36696573:+
Coord C1 exon
chr18:36694936-36695097
Coord A exon
chr18:36695265-36695355
Coord C2 exon
chr18:36696501-36696573
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCTGCCATGGTACGTCTCAGCCA
3' ss Score
0.1
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CCTACACTCTCTGGGCGTGGCTGGCTGGTGTCTCCTTTTGGAGCTAACCCCTGGTGGCTGAGTGTGGCCGCTGCCTTGCCCGCTCTACTGCTGTCAATCCTTATCTTCATGGACCAGCAGATCACGGCAGTCATCCTCAACCGTGCAGAATACAGACTGCAG
Seq A exon
CCACTGTCATCTCCTTGGCCCACATAGACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAAGCCCCCAATTTCCTGGGCATCAG
Seq C2 exon
GGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCTCCATCTTCCTGGCACCTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485_MULTIEX1-16/16=14-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.6=100)
A:
PF0095516=HCO3_cotransp=FE(14.0=100)
C2:
PF0095516=HCO3_cotransp=PD(0.1=0.0),PF0095516=HCO3_cotransp=PU(28.0=92.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGGTGTCTCCTTTTGG
R:
TAAGGACGAACACCACCAAGC
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: