MmuEX6001032 @ mm9
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36695177-36699032:+
Coord C1 exon
chr18:36695177-36695355
Coord A exon
chr18:36696501-36696573
Coord C2 exon
chr18:36698964-36699032
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCCTTCTCCCCACAGGGA
3' ss Score
13.57
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
AAGGGAGCTGGCTTCCACCTGGACCTCTTCTGTGTGGCTGTTTTGATGCTGTTCACATCGGCACTTGGGCTGCCATGGTACGTCTCAGCCACTGTCATCTCCTTGGCCCACATAGACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAAGCCCCCAATTTCCTGGGCATCAG
Seq A exon
GGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCTCCATCTTCCTGGCACCTGTGCTCAAG
Seq C2 exon
TTCATCCCGATGCCCGTGCTCTACGGCATCTTCCTGTACATGGGGGTAGCCGCGCTCAGCAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-'17-18,'17-17,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.0=100)
A:
PF0095516=HCO3_cotransp=PD(0.1=0.0),PF0095516=HCO3_cotransp=PU(28.0=92.0)
C2:
PF0095516=HCO3_cotransp=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTCACATCGGCACTTG
R:
CCCATGTACAGGAAGATGCCG
Band lengths:
177-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: