MmuEX6001032 @ mm10
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36535523-36539378:+
Coord C1 exon
chr18:36535523-36535701
Coord A exon
chr18:36536847-36536919
Coord C2 exon
chr18:36539310-36539378
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCCTTCTCCCCACAGGGA
3' ss Score
13.57
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
AAGGGAGCTGGCTTCCACCTGGACCTCTTCTGTGTGGCTGTTTTGATGCTGTTCACATCGGCACTTGGGCTGCCATGGTACGTCTCAGCCACTGTCATCTCCTTGGCCCACATAGACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAAGCCCCCAATTTCCTGGGCATCAG
Seq A exon
GGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCTCCATCTTCCTGGCACCTGTGCTCAAG
Seq C2 exon
TTCATCCCGATGCCCGTGCTCTACGGCATCTTCCTGTACATGGGGGTAGCCGCGCTCAGCAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-'21-37,'21-29,24-37=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.0=100)
A:
PF0095516=HCO3_cotransp=FE(5.7=100)
C2:
PF0095516=HCO3_cotransp=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTCACATCGGCACTTG
R:
CCCATGTACAGGAAGATGCCG
Band lengths:
177-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types