GgaEX1053627 @ galGal3
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1436830-1440273:+
Coord C1 exon
chr13:1436830-1437008
Coord A exon
chr13:1437204-1437276
Coord C2 exon
chr13:1440205-1440273
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCCTGCACTGCTGCCTGCAGGGA
3' ss Score
7.16
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
AAAGGGGCAGGCTTTCACCTGGACTTCCTCTGCGTCTCACTCCTGATGATCTTCACCTCTGTGATGGGCCTCCCCTGGTACGTGTCAGCCACTGTCATCTCCCTGGCACACATGGAGAGCCTCAGGAAGGAGAGCACCGCCTCAGCTCCAGGCGAGCAGCCCGAGTTCCTGGGCATCAG
Seq A exon
GGAGCAGAGGCTGACCGGCCTGGTGGTCTTCATCCTGACTGGAGTCTCTGTCTTCCTGGCACCCATTCTCAAG
Seq C2 exon
TATATCCCGATGCCAGTGCTGTATGGGGTCTTTCTGCATATGGGAGTGGCAGCTCTGAACAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(4.6=100)
C2:
PF0095516=HCO3_cotransp=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCTGCGTCTCACTCCT
R:
TACAGCACTGGCATCGGGATA
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]