HsaEX6100187 @ hg38
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4 member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr5:140364363-140366022:+
Coord C1 exon
chr5:140364363-140364625
Coord A exon
chr5:140365520-140365578
Coord C2 exon
chr5:140365834-140366022
Length
59 bp
Sequences
Splice sites
3' ss Seq
AATTCTTCTCTGCTTCCCAGGAA
3' ss Score
8.43
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGATTACAGCCTGGACTACCTGCCCTTCCGCCTATGGGTGGGCATCTGGGTGGCTACCTTTTGCCTGGTGCTGGTGGCCACAGAGGCCAGTGTGCTGGTGCGCTACTTCACCCGCTTCACTGAGGAAGGTTTCTGTGCCCTCATCAGCCTCATCTTCATCTACGATGCTGTGGGCAAAATGCTGAACTTGACCCATACCTATCCTATCCAGAAGCCTGGGTCCTCTGCCTACGGGTGCCTCTGCCAATACCCAGGCCCAGGAG
Seq A exon
GAAATGAGTCTCAATGGATAAGGACAAGGCCAAAAGACAGAGACGACATTGTAAGCATG
Seq C2 exon
GACTTAGGCCTGATCAATGCATCCTTGCTGCCGCCACCTGAGTGCACCCGGCAGGGAGGCCACCCTCGTGGCCCTGGCTGTCATACAGTCCCAGACATTGCCTTCTTCTCCCTTCTCCTCTTCCTTACTTCTTTCTTCTTTGCTATGGCCCTCAAGTGTGTAAAGACCAGCCGCTTCTTCCCCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'13-17,'13-16,16-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.063
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.6=100)
A:
PF0095516=HCO3_cotransp=PD(4.3=45.0),PF0095516=HCO3_cotransp=PU(4.1=50.0)
C2:
PF0095516=HCO3_cotransp=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCTACGATGCTGTGGGC
R:
CAAGGATGCATTGATCAGGCCT
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains