RnoEX0082883 @ rn6
Exon Skipping
Gene
ENSRNOG00000018525 | Slc4a9
Description
solute carrier family 4 member 9 [Source:RGD Symbol;Acc:628811]
Coordinates
chr18:29356544-29358206:+
Coord C1 exon
chr18:29356544-29356806
Coord A exon
chr18:29357737-29357795
Coord C2 exon
chr18:29358018-29358206
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTGAATTCTCTGCTTCCCAGGAA
3' ss Score
7.89
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AGATTACAGCCTGGACTACCTGCCCTTCCGCCTGTGGGTAGGCATCTGGGTGGCCACATTTTGCCTGGCACTGGTGGCTACCGAGGCCAGCTTGCTGGTGCGCTACTTCACCAGATTCACAGAGGAAGGGTTCTGTGCCCTCATCAGCCTCATCTTTATTTATGATGCTGTGGGGAAGATGCTGAACTTGATCCGTGCCTATCCAATCCAAAGGCCAGGATCTCCTGCCTACAGTTGCTTCTGTCAATACCCAGGCACAGGAG
Seq A exon
GAAATGCATCTGAATTTGACAGTACGATGTTCAAAGACACAGAGGATGTCTTAAACGTG
Seq C2 exon
CACCCAGGCCTGGTCAATGCTTCCTTCCTGCCACCATCCGAGTGCATCCGGCAAGGAGGTTACCCTCGTGGCCCTAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCTCTGTGCCATTGCCCTCAAGCACGTAAAGAACAGCCGCCTCTTCCCCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018525-'11-15,'11-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.1=100)
A:
PF0095516=HCO3_cotransp=FE(3.7=100)
C2:
PF0095516=HCO3_cotransp=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAATACCCAGGCACAGGA
R:
GAGAAGAAGGCGATGTCTGGC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]