HsaEX7000154 @ hg38
Exon Skipping
Gene
ENSG00000184389 | A3GALT2
Description
alpha 1,3-galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:30005]
Coordinates
chr1:33312501-33321098:-
Coord C1 exon
chr1:33321076-33321098
Coord A exon
chr1:33312807-33312890
Coord C2 exon
chr1:33312501-33312590
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCCTCCCGCCCCCAGGGC
3' ss Score
12.27
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGGCTCTCAAGGAGGGACTCAG
Seq A exon
GGCCTGGAAGAGAATCTTCTGGCGGCAGATCCTACTTACACTTGGCCTCTTAGGCCTGTTTCTGTATGGCCTCCCTAAATTCAG
Seq C2 exon
GCATCTGGAAGCCCTCATCCCCATGGGCGTCTGCCCTTCGGCCACAATGTCCCAGCTGAGAGACAACTTCACAGGTGCCCTGCGTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184389-'2-1,'2-0,4-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF034148=Glyco_transf_6=PU(6.1=58.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCTCAAGGAGGGACT
R:
GGCACCTGTGAAGTTGTCTCT
Band lengths:
102-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains