MmuEX6096237 @ mm10
Exon Skipping
Gene
ENSMUSG00000028794 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) [Source:MGI Symbol;Acc:MGI:2685279]
Coordinates
chr4:128755364-128761740:+
Coord C1 exon
chr4:128755364-128755561
Coord A exon
chr4:128761419-128761502
Coord C2 exon
chr4:128761651-128761740
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCCATTCCCACTTCCCCAGGGC
3' ss Score
8.66
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CATCCCAGACTGCCTCGGGGTGTGGTTCCTGAGCCCAGGAGGCAGAAAGGAACTGGTTCCCCTCCCCACCCCCACCCCCAACATACCTTGTCATTTTCATTGTGAGTAGGTCATTTCTTCCACCTCTCTGGGCTGAAAAAACCCTGCATGGCAGGTTAATCACAAATGGCTTCTCCCAATGGCTCTCATTGAATTCAG
Seq A exon
GGCCAAGAAGAGACTCCTGTGGCGGTTCTTCCTGTCTGCATTTGGTTTCTTAGGCCTGTACCATTACAGGTTCATTATTATCAG
Seq C2 exon
GCTCATAGAAGGCTCCATCCCCATGGGCACCTGCCCTACAGCCATAATGCCTCTGCCGAGGGACAATTTCACAGGAGTACTGCACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028794-'1-6,'1-2,3-6=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF034148=Glyco_transf_6=PU(5.5=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTCTCTGGGCTGAAAA
R:
AGTGGTGCAGTACTCCTGTGA
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types