HsaEX7001799 @ hg38
Exon Skipping
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232521816-232522614:+
Coord C1 exon
chr2:232521816-232521866
Coord A exon
chr2:232521971-232522160
Coord C2 exon
chr2:232522515-232522614
Length
190 bp
Sequences
Splice sites
3' ss Seq
CACCCCTTGCCCCTTTCTAGGGC
3' ss Score
10.13
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GATCTGGGCGCCCCAGGCCTCAAGCTCTCCTCCAGGACCCACCTGAGCCAG
Seq A exon
GGCCGTGCGGCGAGAGGCGTCCGAGCACTGCCAATGTGACGCGGGCCCACGGCCGCATCGTGGGGGGCAGCGCGGCGCCGCCCGGGGCCTGGCCCTGGCTGGTGAGGCTGCAGCTCGGCGGGCAGCCTCTGTGCGGCGGCGTCCTGGTAGCGGCCTCCTGGGTGCTCACGGCAGCGCACTGCTTTGTAGG
Seq C2 exon
CGCCCCGAATGAGCTTCTGTGGACTGTGACGCTGGCAGAGGGGTCCCGGGGGGAGCAAGCGGAGGAGGTGCCAGTGAACCGCATCCTGCCCCACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.328 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.3=68.8)
C2:
PF0008921=Trypsin=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTCAAGCTCTCCTCC
R:
CTTGGGGTGGGGCAGGAT
Band lengths:
138-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains