HsaEX7004192 @ hg38
Exon Skipping
Gene
ENSG00000152926 | ZNF117
Description
zinc finger protein 117 [Source:HGNC Symbol;Acc:HGNC:12897]
Coordinates
chr7:64981387-64991036:-
Coord C1 exon
chr7:64989947-64991036
Coord A exon
chr7:64981984-64982116
Coord C2 exon
chr7:64981387-64981482
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTGTGTTTTTCAGGGA
3' ss Score
12.72
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AGTCAAGCCCTGTCTTTGTTCAGGGCTCAGCCTTTGGATGTTAATCCGCTGGGCCAGTGGCCACCTAAATAAAACCTTCCTGTTGCACCCAGTGATCTCTCCGGCCTCCTGATTCCCACAACATATAAGCATTCCTTTTTCTCTGCAACCTAGCCCGCATCTGTCATTGACTTTTTAACAATAGGCATTCTGACTGGATGAGATGGTATCTCACTGTGGTTTTTCTCTGCATTTTTCTAATAATTAACAACGTGAATTTTGTTTTCATATGCTTGTCAGCCACATGTATGTCTTCTTTTGAAAAGTATCTGTTCATGTTTTTGCTTACTTTTTAATTAGGTTTTTGGTTTTCTTTTTGTTGTTGTTGTTGTTTTCTGAGATGGAGTCTTGCTGTGTCACCAGGATGGAGTGCAGTGGCATGATCTCGACTCACTGCAACCTCCACCTCCCAGGTTCAGATGATTCTTCTGCTTCAGTCTCCTGAGTAGCTGGGATCACAG
Seq A exon
GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTTTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGCATGTGATGTGAGAGAACTACAGAAACCTGGTTTTCTTGGGTGAAG
Seq C2 exon
GTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152926-'3-14,'3-12,6-14=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCAGCCACATGTATGT
R:
ATCAGGTCTGGCTTAGAGACA
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains