RnoEX6001098 @ rn6
Exon Skipping
Gene
ENSRNOG00000058436 | LOC108348215
Description
zinc finger protein 420-like [Source:RGD Symbol;Acc:11371780]
Coordinates
chr1:61502562-61509765:+
Coord C1 exon
chr1:61502562-61502632
Coord A exon
chr1:61504143-61504269
Coord C2 exon
chr1:61506959-61509765
Length
127 bp
Sequences
Splice sites
3' ss Seq
AACTGTGATTTTCGTTTCAGGGT
3' ss Score
9.72
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
ATACACAAGCTGGCTATTCATTGTTCTTCAAAGAGAAAATCAAAGAAGAGAAACAGAAGGACATGTCCCAG
Seq A exon
GGTCTGTTGACATTCAGGGATGTGGCTGTGAACTTCTCTCAGGAGGAGTGGGAATACCTGAACTCTGCTCAGAGGGCTTTATACATTGATGTGATGTTGGAGAATTACAGCAACCTGGTCTCTGTTG
Seq C2 exon
AGAACTACTGCATATGTGAAACTGTCCTTCCAACTGTGAAGACTGAAAAGGACTCTTGTCAGGGTAATGAGCTTGGCGAAATGCTTCGTGGTCCCTCCAATTGTGTACTTTATAAAAGAAGTGACACTACAGAAACCTCTAATAACTACAGATACTGTAAGGACAGGGATGCCTCTGTTGACTCATCAAACCCAGATCAACATACAAGCACGCACACTGGAGAAGAACCTTGCGCATCTAAAAACTGTGAGAAATCTTTCAGTTTGTGTTCCAACATTAGGGAAGATCAAAGACTCTACACTGCAAAGAAAGAGTACAAGCAGGATGAATATGATGACCGTTTCAGCTCTACATATAGTCTCATGCAACAGACAGTTAACATGGGAGAGAAACCATATCAGTGTGGACACTGCAGGAGATACTTCAGTACTGCCTCAAGCTTTAGCATACATAAGAGAATTCATACTGGAGAGAAACCTTACAAGTGCAATGTTTGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058436-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGCTGGCTATTCATTGT
R:
AGTCAACAGAGGCATCCCTGT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]