HsaEX7004296 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100767010-100768721:+
Coord C1 exon
chr7:100767010-100767257
Coord A exon
chr7:100767831-100768011
Coord C2 exon
chr7:100768610-100768721
Length
181 bp
Sequences
Splice sites
3' ss Seq
CGTCCTCCCTGCCTCTGCAGCTG
3' ss Score
11.6
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGCCGCCACCTGCACAGCCTCGGGTGACCCCCACTACCTGACCTTCGATGGCGCCTTGCACCACTTCATGGGCACCTGCACCTATGTCCTGACCCGGCCTTGCTGGTCCAGGTCCCAAGACAGCTATTTTGTTGTGAGCGCCACCAACGAGAACCGCGGGGGGATCCTGGAGGTCTCCTACATCAAAGCCGTCCACGTGACAGTCTTTGACCTCAGCATCTCACTGCTCAGAGGCTGTAAGGTCATG
Seq A exon
CTGAATGGCCATCGGGTGGCCCTACCTGTGTGGCTTGCACAAGGCCGGGTGACCATAAGGCTCAGCAGCAACCTCGTCCTCCTCTACACGAACTTTGGGCTCCAAGTTCGCTACGACGGGAGCCACTTGGTGGAAGTGACAGTCCCCTCCTCCTATGGCGGCCAGCTCTGTGGGCTGTGTG
Seq C2 exon
GGAACTACAACAACAACAGCTTGGATGACAACCTGCGCCCCGACAGAAAGCTTGCAGGCGATTCCATGCAGCTGGGGGCCGCCTGGAAGTTACCTGAATCCTCTGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.0=94.0)
A:
PF0009420=VWD=FE(38.5=100)
C2:
PF0009420=VWD=PD(10.3=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCACCTATGTCCTGAC
R:
ATGGAATCGCCTGCAAGCTTT
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains