MmuEX6021805 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137886590-137888092:-
Coord C1 exon
chr5:137887845-137888092
Coord A exon
chr5:137887347-137887527
Coord C2 exon
chr5:137886590-137886701
Length
181 bp
Sequences
Splice sites
3' ss Seq
TATCCTGCCTACTTCTGCAGCTG
3' ss Score
9.04
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GAGCAGCCACCTGCATGGTGTCTGGTGACCCCCACTACCTGACGTTCGATGGGGCTTTGCATCATTTCATGGGCACCTGCACTTATGTACTGACCCAGCCTTGCTGGTCTAAATCTCAAGAGAACAACTTCGTCGTGAGCGCCACCAACGAGATACATGATGGCAACTTGGAAGTCTCCTACGTCAAAGCTGTCCATGTGCAGGTCTTTGACCTCAAAATCTCCATGTTCAAAGGTCAAAAGGTTGTG
Seq A exon
CTGAACAACCAAAGGGTGGTGCTACCCGTGTGGCCTTCGCAAGGACGGGTGACCATTAGGTTGAGTGGCATCTTTGTCCTGCTCTACACGAACTTTGGGCTTCAAGTTCGATACGATGGAAGGCACCTGGTGGAGGTGACAGTGCCTTCCTCATACACCGGCTCACTCTGTGGGCTGTGTG
Seq C2 exon
GGAACTACAACAATAACAGTATGGATGACAATTTGCGTGTAGACATGAAGCCAGCAGGCAACTCACTTCTGCTGGGAGCTGCTTGGAAAATCCTTGAAGCCTCTGACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
PF0009420=VWD=FE(38.7=100)
C2:
PF0009420=VWD=PD(9.7=39.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACTGACCCAGCCTTGCT
R:
GGATTTTCCAAGCAGCTCCCA
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: