MmuINT0177496 @ mm9
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137887347-137888092:-
Coord C1 exon
chr5:137887845-137888092
Coord A exon
chr5:137887528-137887844
Coord C2 exon
chr5:137887347-137887527
Length
317 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TATCCTGCCTACTTCTGCAGCTG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GAGCAGCCACCTGCATGGTGTCTGGTGACCCCCACTACCTGACGTTCGATGGGGCTTTGCATCATTTCATGGGCACCTGCACTTATGTACTGACCCAGCCTTGCTGGTCTAAATCTCAAGAGAACAACTTCGTCGTGAGCGCCACCAACGAGATACATGATGGCAACTTGGAAGTCTCCTACGTCAAAGCTGTCCATGTGCAGGTCTTTGACCTCAAAATCTCCATGTTCAAAGGTCAAAAGGTTGTG
Seq A exon
GTATGTGCCCTCCATTGCCTCCTAGACCCTGCAGCACCAACCCAACCTCTTTCTCCTTTCTTCTTTTATTGTTGTTACTTTTGAGGTAGGGTCTCATGTGTCCAGGTTGACCTGGAACTTGTTATGTAGCTGAGGATAACTTTGAACTACCAGTCCTCCTGCCTCCACTTTCAAGAAATGAGCTCCAAGACAACTCCATCCTATTCTCCATGTTTGTAAACCCCTGTCCCATTTGTCTTTGTCCCAAGGTTTGTTTCTGACTCTCTCTACCTCTCCTTCCCCACACCCCCTCTCTCATATCCTGCCTACTTCTGCAG
Seq C2 exon
CTGAACAACCAAAGGGTGGTGCTACCCGTGTGGCCTTCGCAAGGACGGGTGACCATTAGGTTGAGTGGCATCTTTGTCCTGCTCTACACGAACTTTGGGCTTCAAGTTCGATACGATGGAAGGCACCTGGTGGAGGTGACAGTGCCTTCCTCATACACCGGCTCACTCTGTGGGCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-Zan:NM_011741:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
NA
C2:
PF0009420=VWD=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGGGGCTTTGCATCATT
R:
ATGAGGAAGGCACTGTCACCT
Band lengths:
357-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: