HsaINT0184447 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100364633-100365634:+
Coord C1 exon
chr7:100364633-100364880
Coord A exon
chr7:100364881-100365453
Coord C2 exon
chr7:100365454-100365634
Length
573 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CGTCCTCCCTGCCTCTGCAGCTG
3' ss Score
11.6
Exon sequences
Seq C1 exon
GTGCCGCCACCTGCACAGCCTCGGGTGACCCCCACTACCTGACCTTCGATGGCGCCTTGCACCACTTCATGGGCACCTGCACCTATGTCCTGACCCGGCCTTGCTGGTCCAGGTCCCAAGACAGCTATTTTGTTGTGAGCGCCACCAACGAGAACCGCGGGGGGATCCTGGAGGTCTCCTACATCAAAGCCGTCCACGTGACAGTCTTTGACCTCAGCATCTCACTGCTCAGAGGCTGTAAGGTCATG
Seq A exon
GTGGGTGTCTTCCTCCTGCCTCCTGGACCCTGAACACCCAGCCTGCTTGCTTCTCTCCTGTGCCCCTCCTTGCCCGGATGCCCACCTCTCTGGCTCCTTAGAGCACCTGGGAAGCACCTGCAGCTGACCCAGACCCTCTTCTCTGGACTCCCTCCTCCCTCTGTGAAATACCCACCAGCACCAGCCCCTCCTGCTCCCAGTTTTTTGCCGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTATCACCCAGGCTGGAGTGCAGTGGTGCGATCATAGCTTATTGTGGCCTTGACCCCCTGGGCTCAAGTGATCCTCCCACCTCGGCCTCCTAAGTAGCTGCAACTATAGGCATGCACCACCTGCACGGCTAATTTTTTTTTTCACTTTTTGTAGAGACGGGCTTTCTCCATGTTGCCCAGGCTGATCTCGAGATCCTGGGCTCAAGCGATCCTCCGCCTCGGCCTCCCAAAGTGCTGGGTTTGCAGGCATGAGCCCCCGTCCTTGCCTTTATCCCGAGTTCTTTCCTGACTCTCCTTTCTACGTCCTCCCTGCCTCTGCAG
Seq C2 exon
CTGAATGGCCATCGGGTGGCCCTACCTGTGTGGCTTGCACAAGGCCGGGTGACCATAAGGCTCAGCAGCAACCTCGTCCTCCTCTACACGAACTTTGGGCTCCAAGTTCGCTACGACGGGAGCCACTTGGTGGAAGTGACAGTCCCCTCCTCCTATGGCGGCCAGCTCTGTGGGCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.0=94.0)
A:
NA
C2:
PF0009420=VWD=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCCACTACCTGACCTTC
R:
CTCCCGTCGTAGCGAACTTG
Band lengths:
344-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)