DreINT0022879 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26075206-26075725:+
Coord C1 exon
chr7:26075206-26075453
Coord A exon
chr7:26075454-26075547
Coord C2 exon
chr7:26075548-26075725
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGCTTACCTTCGTCCTGCAGGTG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GTTCAGGCATTTGCTCGGTTTCTGGTGACCCTCATTATACCACCTTTGATGATAAAGTACATCACTTCATGGGTGCCTGCTCCTACACTCTCACCAAGCCCTGTAATGAGACCTCCGGCATGCCATACTTCTCTGTGGAGACACAAAACGAGCACAGAGACAATAATAAAAAAGTGTCGTATGTAAGATCTGTTATCGTCAAAGTTCACAACACAACAGTCATTTTGGGCAAGGGCCGCAAAATACAG
Seq A exon
GTGAGAGACATTTCCAGGGATTTGTGAAGCCTCATTAACAGATTAGAGGGGATTAAAAGAGCAGTGCATTCATTTGCTTACCTTCGTCCTGCAG
Seq C2 exon
GTGAATGGAGTTCAGGTCACTGCGCCTGTAACACTTTCTAATGGTATTAAGATCTTCATGAGTGGCAAATTTGTGGTGCTTGAGACCAACTTTGGACTGCGTGTCCGCTTTGATGGAAATCATCATGCAGATGTCACCCTGCCTTCCTCTTACAACGGACTGTTATGTGGACTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
NA
C2:
PF0009420=VWD=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGCATGCCATACTTCTC
R:
AAGTGTTACAGGCGCAGTGAC
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]