BtaINT0163464 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36381678-36382317:-
Coord C1 exon
chr25:36382070-36382317
Coord A exon
chr25:36381859-36382069
Coord C2 exon
chr25:36381678-36381858
Length
211 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
CGTCCTCCCTACCTCTGTAGCTG
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGTCGGCCACCTGCACTGTCTGGGGGGATCCCCACTACCTGACATTCGATGGAGCCCTGCACCACTTCATGGGCACCTGCACCTACATCCTGACCCGGCCTTGCTTGTTGAAGTCCCTGGAGAATTACTTCTTTGTGAGCGCCACCAACGAGTTCCGCGGCGGAAACTTGGAGGCCTCCTACGTCAAAGCCGTCCAGGTGCAGGCCTTCGGCATCAGAGTCTGGATGCTCAAAGGCCGCAAGGTCATG
Seq A exon
GTGCGTGCCTGCGCCCGCCTCCCCAGCCCCACCCCCAGCCCACGCGGCATCTCTGCCCTTCCCTCTTGCCTGCAGTTATGCCTGTCCGGCAGACACCGAAACACACCCGCTATCCACCCCCCCCCCCGCCCCCCACCTGCTCCCTGGTCTCTGCCCCATTGTTATCCTGTCCCCGGAGCCTTTCCCTACCTCGTCCTCCCTACCTCTGTAG
Seq C2 exon
CTGGATGGTCGCCAGGTGGCTCTGCCCCTGTGGTTTGCCCACGGCCGGATGACCGTGAGGTCCAGTGGCTCCTTTATCCTCCTCTACACGGACTTCGGGCTTCAAGTTCGCTACGACGGGTACCACCTGGTGGAAGTGACTGCTCCCTCCTCCTACGCCGGCCGGCTCTGTGGGATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.0=94.0)
A:
NA
C2:
PF0009420=VWD=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCTTGTTGAAGTCCCT
R:
GTAGGAGGAGGGAGCAGTCAC
Band lengths:
307-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]