GgaINT0138315 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3544072-3545374:-
Coord C1 exon
chr24:3544962-3545374
Coord A exon
chr24:3544606-3544961
Coord C2 exon
chr24:3544072-3544605
Length
356 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTGGTCATGTTCCCACAGGTG
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGCAGTTTCTCCATCAAGGGGAGATCTTCTGGGAGAACTCAAACTGCAGCACCAAGTGCCGCTGCCTGGACTTCAACAATGAGATCTTCTGCCAGGAGATGGCTTGCGGCCCGTTCGAAGCATGCGAGCCGAAGATCAAGTTCTTCCAGTGCGTGCCTGTGGAGAGCAGCACCTGCGTGGTGTTCGGAGATCCACACTACCACACCTTCGATGGCTTCCTCTTTCACTTCCAGGGTTCCTGCTCCTACCTCCTCGCCAGGCAGTGCTGGCCAGGCTCCCAGCTGCCCTACTTCAACGTGGAGGCCAAGAATGAGAACCGAGGCGGCTCCTCCGTCTCCTGGCTGAGGGACATTTTTGTGGAGGTCTACTCGCACAAGATTGTCCTCCCAAAGGGCGGCTTTGGGAAAGCCAAG
Seq A exon
GTAAGAGCTACACTGAACAGTGGGAACTTGCCAGGTCTGGTCCTGATGGCGAGACCATGATGGTAGTCTTGTGTATTCCTTGAGAAATGGGAAGGGTAGAAGGCATAGCAGCAAAGCCTCAACTGAGGCCTGAGGCTTACCGATGTCTGGCCAGCCTTCTCCTAGAATCATAGAATCGTTAAGGTTGGAAAGACAACTAAGACCATCTTAGTCCAACCATCAACCCATGCCTGTGACCACTTTAGATCATGTCACCCATCTATAAACATAATGCCCCGCAGTGGGGTCCTCTGCCCCTCGTGTGAAGCCTCAGCTGTTTCCCACAGTGGCTCAGTCCTCTGGTCATGTTCCCACAG
Seq C2 exon
GTGGATGACTTGGTGGTGTCCTTACCCATCTCCTTGGAGCTGGGTGCAATCAAAGTCTACCAAAGCGGTTTGTCCACAGCCCTGGAGACTGATTTTGGCCTGCTAGTGACTTACGATGGCCAACACTACGCCTCCGTCTCCGTTCCTGGCACGTACATCAATGGCACGTGTGGTCTGTGCGGGAATTACAACAAAGACCCCGAGGACGATGCGCTGCGCTCGGATGGCAGGTTGGCTTCCTCCGTGCCAGAACTGGGCGAGAGCTGGCGAGTGCCGCACCCCGAGAGGAAGTGCTCCCCTGGCTGTGTGGAGAACTGCAGCGTCTGCGATGCCTCCACCGAATCCCTCTATTTCTCCCCCGAATATTGTGGCTTCCTCAACAAGAGTGGCGGGCCGCTGTGGGAGTGTGGCTCCGTCGTGGACCCCACTGCCTTCGTACATAGCTGTGTCTATGACCTGTGCAGCGCTCGGGAGAACGGCACCGGGCTGTGCCAAGCCATCCAGGCGTACGCTGCGGTGTGCCAAGGCCTGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.5=37.0),PF0009420=VWD=PU(50.3=57.2)
A:
NA
C2:
PF0009420=VWD=PD(48.4=42.7),PF087426=C8=PU(95.4=34.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACCACACCTTCGATGGC
R:
GCGTAGTGTTGGCCATCGTAA
Band lengths:
350-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]