BtaINT0146763 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32278993-32286264:+
Coord C1 exon
chr15:32278993-32279405
Coord A exon
chr15:32279406-32285693
Coord C2 exon
chr15:32285694-32286264
Length
6288 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTATTGCTGTTGTTGGCAGGTT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GACAGTTCCTTCGGCGAGGGGAGGTGTTCTGGGATGACCTGAACTGCACCATCAAGTGCCGCTGTCTGGATTTCAACAACGAGATCTACTGCCAGGATGCCTCCTGCAGCCCCTACGAGCTGTGCGAACCCAAAGGCAGATTCTTCTACTGCAGCCCGGTGGAGACCAGCACGTGTGTGGTGTTCGGGGAGCCGCACTACCACACGTTTGATGGCTTCCTCTTCCACTTTCAAGGCTCTTGTGCCTACCTATTGGCCCGACAGTGTTTGCAGACTTCCAGTCTCCCCTTCTTCAGCGTGGAGGCCAAGAATGAGCACCGGGGGGGCTCAGCCGTCTCCTGGGTGAAGGAGCTCTCGGTGGAGGTGAATGGTTACAAGATTCTCATCCCCAAAGGAAGCTATGGAAAAGTCAAG
Seq A exon
GTGAGACCCTCTCCATCCTCCATGGGGTGATGGGGAAGCTGGAGATGCTTCATCCTGGGGAAGACCTTCCCAGATCTACTAGTTCTGCTGTTTGCTGTTGGTACCAAAGACTTGCATGGCTCTTCCTGCCTTGCAAATGCCTTGTAAAATTGTCCATGAGGCTAAAGTCTGTTTGTGCAAGAGCTAAGCTTTCTCTTTGACACATCTATCTGCTGGGTATCTTAATGTACATTTAGGTTCTTAGTTCCCTCATACACACACACACACACACACACACACACACGCACACACACACACACACGCACATGTACACCCAACCTCAGAAGTAACTGGGAACAGAGGTAAATTTAGTTTCTCATAGACCTAGCTTGAAACAGTGGTAGCCACATGGCCATGCCCTGGAGTCAATGTAAACACAAAATACAAACCCATAATTCACTACAGTCTTTGATTAATAATCCTCACCCCACCCACTCATTCTGTTTGCCAAAGAGCTGTGGCTTCATTCTCAGAGAAACCCCTAAATTGATTGATGTGTCCATAAGCACTGTCTGTCCAGGCAGCTAGAGTGGGCTGGGTGACTTCTTTAGTGAAACCTGGATGGAAAGTTACAGTAATTGCCCGAATGCTCCTTTAACACAACCCCCTCCCACCCCCGACTCCTGCTTGTAATGTGAGAGAACACGGATCTCTATGATTTGGTTTGGTTCGGTTTGGTTCGTTTAACCTATGCAAATGATTCTCGTCCCCGTCCACCTGGATATCAGGATAGGGCACTGACAAAAGAGAGAGAAAAAAAGCCACTAGCAATTACTCAATTTGTGGAGGCCCCAGTTTTCATGATATTAATGAAGACCCTGTGGCAGCCGTGCATTTATTCAAGCAGTAATAACCAGGACCACAAGGGGCTGATTGCTGCAACCCCATGGAGTCCTTAATCCCCAAGCACGAGGTCATCACAGAGATTACAAACCAGAACAGATGCCAACACAGGGAGGTCTTTCTTTTTATTTTAAAATACGTTTTGTAGTTTTAATTGGTGCAGTGTGGCCAACGAAAGGCAGGACCGAGGAACCAATTTCACTTTTTCTGGCTCTGCCCTTCCTAGGTCTGTGCAGCGTATCAGTGTCATAATTAGAAAAGTGGGCTATTACTGTGGTTGAAATGCCAATTTGCTTGTTATTTGGTTAGTCTCCCTAGAGACAGGTCTGTAAATCAAATCAAAGGTAAGAATTCAGCTGCGGAAGTTTGGAATTTTTCCCTTTTAAATTTCTCTTGTGCTGTCGAGCAGGACATTTGTCCTTGCGGATAGATGCTAACATTTCCAGCTAGAAAAATGCTCACTAGCTCTCCCCTACCCCCTTGTCTTGTGGGGATCATGTGTACAATATCTGTAGTTGAAAAAGAAAGCTTCATGCTTTATTCCTATTTTCCATTTTGATTAAAAATTCTTTTCCCCTCACAGTCAGACTCTTTTTTTTTAAGAAGGAAAGGGGCACCGCCAGTGCTTTCGGGCCCAGCAGCTCTGCTAATTTTGCGTGGCTGTCTTCCATCGTCCGAGCGGAGGGCACGGATTCCTCAATTTTCTGTAGCGACAGGGAGGTGTGGATGTGAATGTAAATGTTTCAGAAAGAAAAGGTTATGTGATTCCAACTGCAAGTGAACAATGGCTCCCTTTTCCTTTTGCCAAATGGCTTCCAAGTGTCTCTGAATACACCTGCTCTGCCGGGGGAGGGCGGCTCCGTGGATGGCAGAGCCCCCACCCAGGGTGACGTGGGGACAGGCGAGGAGGGGTTGTGAGGCAAGAAGGAGCCTGATTTGCCTGCGAGGCAGCTGACTTCCAGGCATGCCAGGCCGGCAAACAGATCTTAGGAACGGATCGCCTTTCTCCGTATGCTGGGGTTAGGAACTGGGTTCTGAATATGCATTTTCCCCCTTGGAAATGTTCTTAAGTGACAAAATAAACAATTTAGGATTGTATATGTTAATAGGGGGGAAAAAACACAAAAAAAACCCAGCTGCTGTTGCTGCTGCTGCTAAGTTGCTTCAGTTGTGTCCGACTGTGAGACCCAATAGACGGCTGCCCACCAGGCTTCTCCGTCCCTGGGATTCTCCAAGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCACTTAGTCGTGTCCAACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCCCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGAAAAGCCCAGCTAGCACCCATATATAGAAAATGTCTCCTTCTAGCTAATACTTATCAGTTTTCATCTTTTTCCCTCGGATAAAACTGTGTAGTTTAGGGTGCATCAGGGAAAAGAGGGCCAATGCCAAATAGCTCAAAGAGATCAGACTCTGAGGTCAGATCTACTCAAGCCCTGTGCCACCACGCCAGTTGAGAGGCCTCTTTGAACCTATGTCCATCTATAAAATGGGGTCATTGTGTTGTGTCTGGAAGGGAGGGCTCTTGGCTATAGTTTGGACTTGACTCCCTCTATTTAGCCCCAGACAGAAGCAGCAGGGAACGGTGGAAAGTGGGAGGGTCCTGTCACCCACAAATTATGCAAGCCTCGAACCTCAGTTTCTCCATCTGCAAAGCGGGGAGATTATAAAGACCTTATTAGATTTTTCTGAGGATGAAACAGGACAGCCACATGTGTGACAGCTGGTACAGAGCCTGGCAAACAGTAGGCACTCAATATACACTTGTTCCCATGCTGCCATTCCCACCAAAATTTTTTCTTATTCTAAGACCTGTCCTATGACGCTACTTCTCACTCCTCTTCTGGGAGAAATATCGTTCTGGGGGAGGGTTGCCTGGAACACAGGGAGAGGAGGAGACACAAACAGGGAGACTCATCAACATCGGCTCATCGGAAGCTGAGGACTGGGACACCAGGAATGAAATAAGAAGCCATGTGATAGTAAGAGTCCCCAGAGCTCCTACCCCGAGCTCTGTGGGGTACAGCATAGGACTCTAACATGTGGTTGAAACTGAGACAAGTACGAGAGAGGAAGCGGGCACAATGACCACTGTGTCAGGAAAAATACCTTGGGCAACAATAATGGTCAGCATAGGGACACAGGCGTTCTGAGTAGGACAAGATCAGCTGCAGAGAAAGCAGGGGCCAGTAGCAACATCCAGGCACAGTCCCCGCTCTGTGGCTTCTGCTCTGAGATGCAACAACGGTCCTTTTTTTAGCAGGAGCTGAGTGAGAGGAGAGGAGGACATTCAGCGAGGGAGGTATTTGGCATTTACAATTATACCACCTTGGAGGAGATGTCCCTCCCTACATCTCAGCACAGAACAATACACAATAATCACCCAGCGCTCTTGCTGGCTGACCTCCCTTAGAGCATGGCTCTTCTCATCTTTGCAGGCTAACTTGCTACCTGGGAGATAGGGATGAATCAGTCAACTCTAGGGGATTTTTTTTCCTAATTCTAACTCTCATCGGATAGCTTTCATCTCAAGCCTGTTTTTTTTTTTTTTTTTGGTCCCCTCCCCCCATTAAATCTTACTAATCTCTGAGGACAGAGAATTGCAATTGGCATTGGCCTGGTAAACCTTGGGAGCAACGCTCAGTCAGTTTGTTGTCTCAAATCCTAGACAACCCAGAGAGTAGCGGCAATGGTGGCACTAAAGACCCTGATGTTTTCATGTGCCAGAAAGCAGGACAGGTCAGGGCAGCCTGGACAAGCAGTTACAGTCAGCCCACCCAGGACTGCTCTAGGACTAACCATCTATTCCAGCCCTCAGAAAGTGATGTCCAGAGGTGCCAGGCAGGGCAAGTGTGAGAAAGAAGAAAACAAACTCTATTGAAGGCTTATCAAGCCACTTACTCATGGGATTCACCCTTGATTCTTTGCCCATTTTTCACCCACCCCACACACACACCCTGCAAAAAGCCCCAGGCCCTGTGGAGTATCCTCTACCAGCTGGCCCTTCTCCACGTCTGTGGGCAGGTCAGGCCTTGCCCTCCATTGCCCCCAGCCTCCAACACCAGTTACCTGCCTGATTTCTCTGTTTTTAATCTCCACTTGGGCTTCCCACGTGGCTCAATAGTAAAGAATCCACCTCCAAGAGATGTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATTCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCACAGGGTCGCAAAGAGTAGGACTCAACTGAGCAACTGAGCAAGCACGCCATCTCTACCTACTTCAATACATCCTTCCCACTGGCCAGAATGGACTTCCTCAAACACAAGTCTGACCATGGCACTCCCTTGCTTAAAACTTTTCAGAGCTCTTGCTATAGAAGAGAAATCCAAGTTGTTTTTTGTTTTAGTGGGGTTTCATTTTGTCCTAAAAACAGACTTTTTTCTGAGATCTGTTCCCAACACAGAAGCCAAAGCAATTCTCCCAAAACGGAAGTCAGATCTTGTCCATCTTTTGCTCTGCGTGCCCTCTCGGCTTCCCTCAGAGTCACCGCCAGAGTCTTTACAATGGCCAACAAGGCCCTGCCTGTTCTGGCTGCCCTTATCTCTGTGACCTCACTGACCATGCCCTCTGCTGGCTCTCCACTCCGGCCACATGGCCCATGTGCCCCCAGTGTGCCCAGCACGCTCCACCCCAGGGCCTCGCTGCACTCTCTGCCCAAGCCACTCTCACCCCAGGCAATGGCATGGATTCCTCCTCATCTCAAAGGTCTCCTTCCCCGTGGGGCCTTCCCTGGCCCTATTTAAAATTGCAAACTCTCTAGCACTTTGGACCCACATTCCCAGCTTTATTTTCCTGCAGAACAGTTTCCTGGTGTTGTTACCTATTTTCCTTATTGGTTTTGTTTATTGTTGGTCTCCTGAAGGGAAACAGATGTTTCAAGAAGCACATTTTTGTCCCCAACTCTTAGAACAGAGCTGGACACACAGAAAGGGCTACGTTGTTGACATTTGTTGAATGAATGGACCCTGCTTGTGTCTCCACCTTCATCTCCAGCCACCCCTTCCCTCTGCAGTCCAGCAACACCCGATGACTATCCTCATATTCATATAGCTCTATCTAACCGTGCAACTTCATTCGCTTGTCCTGGAATTCTCTGACCCCTACTCTTCCTTCAGCCACTTCTGCTTATCTCAGAAGACTCAGGTCAGACTTGATTGCCCCTAAAAAGCTGATATGAATGCCCCCTCCCCAGGCTGGAACAGTGGTCAGGTACCTTTCTCCCACTGGATCACTGCATCACCTATGAATGCATATTTTAACTGGTACATTGATATTTGTGTCTCTCTTCCTCAGTAGACCAAGAATTCAGGGGCAGGGACAATTACTTTTTTTAAAATTCTTTTTCTCAACACCTAACATAGTGCTTGGTACCTAGTAGGTATTCAAATTTGTTGTGTTGAATGATGACGTGACAAAGTCCTGGTATCAGGAAGTGACAGGGTGAAATACTCAGAGAATAACACCAAGGCAGCCTCAAAGCTTGATGGTGTGGGATGGTTTATAGTGCCCCTGCCTGCTGGGAGGAGTGTCCAGGGGTGCCAAGGGCAGCTTGGGGATCATGGAAAGTATGTGACTTGAGCTGAGACTTAAAGAATGGATTTCGAGGAGAAAAGAGGAAAAGCCAGGTAACTAGTCTTTCGAGAAAAGACTTGAAGCTGGCCTGAGAGCCAGGCTTCCCAGGGGGTACAGTGGTAAAGAATCTGCCTGCCCATGCAGGAGATACAGGAGACGTGGGTTTGATCCCTGGGTCTGGAAGATCCCCTGGAGGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTGGGCTATAGTCCACGGGGTTGCGAAGAGTTGGACGTGACTGAGCATGCACACATGCCTTGAGAGCCAGGCAGGAAGTGTTGACCACTACCTGGTCCCCAGAGGGGTCTAGAGTGGCACTAAGCAATGCATATCTGTCACAACTCAAATGCCAGCCTGCTCTCAAGGGTCCTGGGGGCCTCTGCCTTCCTGGAAGGCAAGCCCCGCCCTCCGGTGACCTGAGCAGCTTTGGGGCCATGCACTCTGGGTCACTGAGTTGCTCCTCCTCCTTTTCCTGACCTCGGCTGGACCCACTACCCTGGCCTCTGCTCACCTGCCTTTTCACTATTGCTGTTGTTGGCAG
Seq C2 exon
GTTAATGACCTAGTGGCTTCTTTGCCCGTCACCTTAGAATTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACGGATTTTGGGCTCTTAGTGACATTTGACGGCCAGCACTACGCCTCCATCTCCATCCCAGGCTCCTACATCAATTCCACGTGCGGACTCTGCGGGAACTACAACAAAAACCCTCTGGATGACTTCCTGCGCCCTGACGGCAGGCCGGCCATGTCAGTCCTGGACCTGGGAGAGAGCTGGCGGGTCTACCACATGGAGTGGAAGTGCGACTCGGGCTGCGTGGACAACTGCACTCAGTGTGACACGGCCACCGAGGCCCTCTACTTTGGTCCCGACTACTGTGGCTTCCTCAACAGGACGGACGGTCCCCTGTGGGAGTGTGGCACTGTTATGGACCCCACGGCCTTCATGCACAGCTGCGTGTATGACTTGTGCAGTGTGAGGGACAATGGGACCCTCCTGTGTCAGGCCATCCAGGCCTATGCCCTTGTGTGCCAAGGCTTGGGCATTCCGATTGGAGACTGGCGCATCCAGACTGGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.3=36.2),PF0009420=VWD=PU(50.3=57.2)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development