MmuINT0158799 @ mm9
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42185577-42192490:-
Coord C1 exon
chr9:42192078-42192490
Coord A exon
chr9:42186148-42192077
Coord C2 exon
chr9:42185577-42186147
Length
5930 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTACTGTTACTGTTGGCAGGTT
3' ss Score
6.56
Exon sequences
Seq C1 exon
GACAGTTCCTTCGTCGAGGGGAGGTGTTTTGGGATGACCTGAACTGTACCATCAAGTGTCGCTGTCTGGATTTCAACAATGAGATCTACTGTCAGGAGGCCTCCTGTAGCCCCTACGAGGTGTGCGAACCCAAGGGTCGGTTCTTCTACTGCAGCCCAGTGGAGACCAGTACCTGTGTGGTATTCGGGGAGCCACACTACCACACCTTTGATGGCTTCCTCTTCCACTTCCAAGGCTCGTGTGCTTACCTGTTGGCCCGACAGTGTCTACAAACCTCCAGCCTCCCCTTCTTCAGTGTGGAGGCCAAGAACGAGCACCGAGGGGGCTCTGCTGTCTCGTGGGTAAAGGAGCTCTCTGTCGAGGTCAATGGCTACAAGATTCTCATTCCTAAAGGAAGCTATGGGAAAGTCAAG
Seq A exon
GTAAGACACTCTCCAAACATCACAGGGAGATGGAGAGGGGCCAGAGGTGCTTCAGTCTGGGAAAACCTTCCTCTGTCTACTGTTATGTTGGTTGTCTTACGATAAGCCAAACGGTTAGATGCACTTCCTGCTTGGAAGATGCTTTGTTTGTTTGTTTGTTTGTTTGTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCATGCACCACGAAAGATGCTTTAATAAGCCAAAGTTTTTGTGTGCAAAAGCTAGTGAGAGCATATTAAAAAAAATAAAAAAGAAGTATACTCATACTCTTAGTTCCTTCACTGGTGGACACTGCTTATATGTGTCTATGTGCACACATACAGTTCGGTATGTACGCCTCAGAAGTCCCAGGAACAGAATGGCAAGCTTAGTTTCTCATAGACTTGGTTGGCAAACATTAAAGTTATACAGTCCTGGCCAGGCTACAGTGCAAGCACAGAGTGCCTACCCTTAATTCAGTACAGCCTTGGGTGTCATCATCCTCAACTCTCCTCAGCCTCCATCCCGTTTGCCCAAGAGCCTCTGTTTCATCCCCAGAGAAACCTTCACACTGACTGGTCTCCAACAGGTATGGCCGTAGAACAGCTTTCATGATATCCTTAGTGAGTCCTGTATGGGAAGAGCCCAGGAAAGCTTTACCCAGATGCCACTCTACAGAAACCCTCCACTCCACCCACACAGACAGCATAGAGCACATAGCTCTGTTGGTCTGTTTAGCATATGCAAATGACTCCTGTCACAGGGGTGTTGACTAAAGAGGGGAAGCCAGAAGCGACTGGTAATTACTCAATTGGTAGAGGCCTTAATTTTCATAATGTTAATGAAGACCTTGCTGTAACCATGTAGTTATTCAGGCAATCATAACTTGGAGACCACAAGGGGTGATTGCAGTACTCCATGTAATCCTTAATCCTGGTACATGGTCATTAAATAGAGTATCAACCAGAACTAATAAAATCTGTGTTGTAGTTTTAATTGCCGAAGCATGTCCAACAAAAGGCAAAACCAGGCAAGTAATTCCACTTTTCTTTTTCTTGTTGGCTCTTCCATTCCCAAGTCTGTGCGGTTCGTCAGCTTGATAATTAGGGAAGTGAGCTATGACCATGGATGAAATGCCAATGTGCTCGTTATTTGGTTACTCTCTCTAGGGACAGGTTCATATATCAGAGAAGAACTCTAGTACTGAAGTTTGGAGTTTTTCCATTGTACATTTATATAGCGCCACCAAGCATCGTCTTTATCCTGGTGGATAGACACATTCCCTGCTAAATACTTTTTTCACCAGCTTTCCCAACTTGCTTGCATTGTAAAAGAACAAAAAAGGTGTGTCTGCTACCAGTGGCTGAGAAGAAAGCGTCATGCTTCGTCCCTGTTTTCCATTTTGATTAAAATTCTTTCTTGCCTGGGCTCAGACTTTTCCTTCTTCTTCTTTTTTTTTTTTCTTTTTCTAATGAAAGAAAGGACAGTGTCGTCTCTTTCAGGCCCAGCAGCTCTGCTAATTTTGCATGGCTCTGTTCCACCATCCAGGCGTAGGGCATGGATTCCTCAATTTTCTGTAGCGACAGGGAGATGTGGATGTGAATATAAATGTTTCAGAGAGAAAAGGTTATGTGACTCCAACTGCAAGCTAACAACGGCGTCCTTTTCCCTTTGCCAAATGGTTTCCAGTGCCTCTGAATACACCTGCTATGCTAGGCAAGGGTGGCTAGATGAAGGCAGAACTCTGACCCAGGGTGATGTGGGGACAGCCAGGGAGAAGCCCAGGAAACAGGAAGGAGCCCAAGACTCCTGGGAAGCAGTTGACTTCCCAGCCATATTGTTCCAAGCCTGGAATGGCTCAAGTTGTGTCCTTGCAAATCACAGACCCCCTTTCTCCAACCCTGTGTCCAGTTGCTGGGCTAGCAGCAACATTCTTTCAAGGAGGGTTTTCTCTGTTGAATCCATTCTCAAATGATAAAATAAACAAGTCTGGTTACATATGTTAATGAAGCTCAAAGAAAGCCAGTTTAACTAAGCCTCCATACCCAGCAAATGTTTCTAGTGACTATAGGGTTTCATATTCCTCCCCTACATGAACTAGAATGGGTTAGGGTATATCTAGCCCACAGAAAATGGAGACTTTTGACTCTGGAGTGGGACCTGACATCAATGCTGTCAGGATGGACTCTAGCTTCATTTTTCTTGTCTGTCAAGTGGGAGAAGTTGTGTCCCCTAGATTGAACCCCTAGACTATAGCCTAGACTTGGTTGCCTACACTCACAGCTGATACAGGCAGCTAGAATCAGTGGTGAAAGATGGAATGGACCTCAGCAGGCTTCAGTTACCAGCTTCATCCTCAATTAAAGGAGAACATGATAAGAACCTAAGGTTTCATAAATATTAAATAAACAGATGTGTCTCACACAGCACAGAGCCTGGCACACAGTAGGCATTCAGCACATGCTGGTTCGGCACTGCCATTTCCAAGACCCACACTTTGTGGTTCATCTTTTCTCCCCTCACCTTGTCCCTGTACACGTCCTGGGCGAGATCGGTTGACAAAGAAAATGCCTAGAACACATGGAGAGGAAAAGCAGAGAGGTTTGTCTGTTGCTAGGGAATGAAATGTAGGAATGAACCAATAAATCATAGGTCAGGGTATTTTTCTAGGAGTTCTGCTTTGAGCCTTAGAGGAACACAAGCATGGTGACTAACTGTGGCAAGAGTAAGGAAAGTGCCATGCACTCTTAGGTCAGATAAAAAGTTCTCCAACTGTAACTTATGGGCAACTGTAATGGTGTCAGCCAGAATCCAATTGAGAACAGAGACAGGAGAGCCTGTGGGGTATGGGGGGTACAGGGACTGCAGAAAAATCCAGAGGCTGGTGGTTTCTCTTGATGACTTTGTGTTCTTGCTAGGAGCAGGAACTTAAGGGAGAGAGAAGGAAGCATCCAGCAATTGATGTGCTTAGAATCTGAAATTATACCCATTTTGCAGATTCGCTTTTCCACACCTCAACATGGACAAGAACTAATTGTTCTGTACTCTGGCAGGTTGACCTTCCTTACAGAATAGCTTTCTGAACCCCTGTTAGCTTAACTCTACCTAAGCAATAGAGACAAATGACCCAACATCTTGGTTTTTCCATTTCTAACTGTAGGGCAGTTTCTTTCTCAGGGCTATTCAAGCCTTTTCACTACTGCTACAGTCTGAAGGTTTATGCCCTAACCATTCATCCGTTGATGTTCTATTAGTAAATTCTCTTGGGGTGTTGTTAAAAGATGGAATGTGGGAGAACTAACTAGATGATGAAGGAAGAGCCCTTGTGAATATGACTAGTGCCCTATAGAAGGCCATAGGAAGCTTTTTGCCCTTTCTATCACATGAATATACATCTACCAACCAGAAAGCTGGCATTTACAAACACTAATCTGTTGGCATTCCTAACTTGGATTTCTCAGCTTCTTGAACATTCTGTGGTTTATAAATATTTTATTACAACTCAACTTAAGCTAAGACAGAACACTGGTACCAGGAGTGGGGTGCTGCTATGATAAATACCTAAACAAACAAAAAATTGTAGTAGTGGCTTTGAAACTAGATAATGAGCAGAAGGTGTCAAGAGTTCTGAGATACATACTAGTTGAAGCCACATCACTGTGAGTAGACCATTAAGGGTAATCCTGTTGAGGGTATGTGTGGCATTTATTTCAGTAAACCTTGAGATCAGTATCATTTCCAATTCAGAATGTAATGACCATATAGAAGGTAAGATTCCTGCCCTTCCATATGCCGAAAACCAGTATGAGTCTAGGTCAGCCTGGAAAGTTGATATGCAATTAAAGTCAAGCCCACCTGAGGATTCTTACAGTACCAACCACTCTACTTCAGCTCTCGAACGTGTGCGTCTTCCGAAGCTAAGCACCATAGGTGTGAAGATAAAACCGGATTCTCTGTTAGTAGCATTCTAAACCACCTGTACATGTTCTCTAGATAGCTGGGATGCACTCTTGACTTTTCCCCCAGTTCTTATTCAACCACAGGAGAGACTGTGCTGCAAGGAACAATTGAGTGAGCTGCACTTGTCCCTCCCGCTTGCAGCCTGGTTTTAGGTTTTATCCCTAGCTCCCCTTGAGCCCTGGCAGCAGCTGCCTGTCTGGGCCCCTTTGCTTCTCATCTTGACTTAGTTTAGCAAGTACTTCCTTCCAGCCAGGATGAGCTTCCTGAAATGCAAACCTGCCCGTGTGGTTTTGTTTGTTTGTTTGTTTACAACCCTTCAGGGGCTTTCTCCCTAGAGAAGAAATCCAGTTCTTCTTGTGTTGTCTTGTTTTTAACATAGCTTAAAGGCCCTTCAAGGTCTGTTCTCAAAGTGGGAACCAGAGTGGTTCTTTCAAAGTGGAAGTCAGAGCCTATGGGTCCTTTGCTTTAAATACCCTCTTGGATCAATATTTTGCTCAGAGCTAAAGCCAAAATCCTATCTTCTTCTGGCTGCTACCCTGCCTGAGGCCAGCTTTTGATTGCTCAGCTCGGTCACGTGGAGACCCTGATGTCTATAGCACCCAGACACACTCCCGTAACACCTTAGGGCCTGCAGATCCCTCCCTGGAATCCCTTAGCCTAAGGCTTCTTCCTCTCTCAAATGTTACCTTCCTATGTATCAGTGCCCTGACCATTCGCTTATAGCTATAAACTCTGTTTCTGAACACTGGGATCTTCACCCATGCATCATTAGATATTAGACACCATTTGATTCACCAGTGGTTAGTCTCTAGGAAAACTCTAGGTTTCATAAGGCAGGGGATTTTGACCAACTCACTCATCAGTAACCCTCAACTCTTAGAGCATTGCTTGACACCAGAGAAGGCCCAGGACTTGGCTTGTGTTTTCAGCTTCATCTCTGGCTACTGGTTCCCTCGGCAGCCCTGAATATCCCATGACTTCCCCCATTCTACACAGTTACCTCTAATCCTCTGCCTTTATTCTTCTGTCCTGGAATTCCCTGCTCAACACCCACCCGGGGCCTTTCTCTGGCAACTTGAGTTTATCTTTGAAGACTCAAGTCAGACTTAACTGCCTCTAAAAACTTTGTATGAGTCCCCAAGGCCGGGTTAAGTGTTCACTCCATTCTCCCATCGCACCCATTGATTCATATTTAAAGCTGATGACTATAAATATCTGTTTGTGTTCCTCTTCTTCAGTAGGCTGAGCACTCCTTGAGGAACAAGGGTGAATATTATTTCTTTAACCCTACACTTCTCAGATCCTGACAGAGTGCTCGGTCCTGATCAAGTATTCAGATTTATTGCTGTTGAACGATTGAATGAAGGTAGTCACCGTACCACGTGCTTAGAGTAAGAAGGCCAAGGGCGGCCTCCAAGATCAACTTGGAGCATACTAAAGTTAGTACAACCATGTTTCATCTTGTAGGAGTGTCAGTGGCTGCAAAGGGCAGAGAGAGGATCATGGAGAACACACATGATACCCTAGCATCAGTGGCTCATCAGAGAAATAAAAAGGGAAATCAAGGTGATCCACCTCTCAGTCAAAAGCTTGAAGTCAGCCTAGAGCCAGGCAAGAAGGGTGCCAGCCAGCCAGTCCCCAGAGGCATGCACTAGAACTGTCAGAGCTATTGGGCTCAAATGACCAATGCCCTCTGGCCCACAGCCCGCCATTACCTAAGTATTTCCCCCAGACATTAGCCACAATAAGAGGTAAGGCCGTGGAAGTCTGAAAACTCGGGGTGACCACTCTCTCCTAAATAGTTGCTCTGCCAACCCTTGCCAACGTGTGCATGGGCACCTGCTTACCTGCCTTTTACTGTTACTGTTGGCAG
Seq C2 exon
GTTAATGACCTAGTGACTTCTTTGCCCGTCACCTTAGAGTTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACGTTTGACGGCCAGCACTACGCCTCCATTTCCATCCCAGGCTCTTACATAAACTCTACCTGTGGCCTATGCGGGAACTACAACAAAAATCCACTGGATGACTTCCTCCGCCCCGATGGCAGGCCCGCCATGTCGGTGCTGGACCTAGGAGAGAGCTGGCGTGTCTACCATGCTGACTGGAAGTGTGGCTCTGGCTGTGTAGACAATTGTACTCAGTGTGATGCAGCCACTGAGGCCCTCTACTTTGGTTCTGACTACTGCGGCTTCCTCAACAAGACGGATGGCCCCCTGTGGGAGTGCGGCACTGTTGTGGATGCCACGGCTTTTGTACACAGCTGTGTGTACGACCTGTGCAGTGTGAGGGACAACGGCACGCTCCTCTGCCAAGCCATTCAGGCCTACGCCTTGGTGTGCCAAGCCCTTGGCATCCCAATCGGAGACTGGAGAATCCAAACTGGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-Tecta:NM_009347:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.3=36.2),PF0009420=VWD=PU(50.3=57.2)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: