HsaINT1043981 @ hg38
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121118306-121125872:+
Coord C1 exon
chr11:121118306-121118718
Coord A exon
chr11:121118719-121125301
Coord C2 exon
chr11:121125302-121125872
Length
6583 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTATTACTGTTGTTGGCAGGTT
3' ss Score
6.56
Exon sequences
Seq C1 exon
GACAATTCCTTCGGCGAGGGGAGGTGTTTTGGGATGACTTGAACTGCACCGTCAAGTGCCGCTGTCTGGATTTCAACAATGAGATCTACTGCCAGGAGGCTTCCTGTAGCCCCTACGAGGTGTGCGAACCCAAAGGCAAATTCTTCTACTGCAGCGCTGTGGAGACCAGCACATGCGTGGTGTTTGGGGAGCCACACTACCACACTTTTGACGGCTTCCTCTTCCACTTCCAAGGCTCCTGTGCCTACTTGCTGGCCCGACAGTGTTTGCAGACTTCCAGCCTCCCTTTCTTCAGTGTGGAGGCCAAGAATGAACACCGCAGAGGTTCAGCCGTCTCCTGGGTGAAGGAGCTCTCAGTGGAGGTGAATGGCTACAAGATTCTCATCCCCAAAGGAAGCTATGGAAGAGTCAAG
Seq A exon
GTGAGCCCCTTTCTATCCTTCACGGGGAAATGGAGAAGCTGGAGATTCTTCAGCCTAGGGAAGACTTCCCCAGATCTACTGGTTCTGCTGTTTGTCTCTGTACAGTGCCAAAGAGATGCACAGCTCTCCCCGCCTTGCAAATAGCTTGTAAAATACTTTACTGGGCCAAATTTTATGTGTACAAGAGCTATCCTAAGCTCTCTCCTCAACATGTCTATCTGCTTTTAAACTTAGAGTACATTTATATTCCTAGTTCCCTCATAAACACTGATAGGCACACACACACACACACACACACACACACACACACACACACACACAGTTCAGAAAAACTGGAAAGAGATAAGTTTCTCATGGTCCTGGCTTGCAATAATTGTAGCCACATAGCCATGCCCTGGAGATGGTACAAACACAATACAAACCCCCAATTCACTACAGCCTTTGATTAATAATCCTCACCCCACCTCAGCCCCAATTCTGTTTGCTCAAGAGCTGCTGCTTCATTTTCAGAGAAACCTCCAAATGGATTGATGTCTCCAGAGGTACCACCTGTGCAGGCACCTGGATTGGCTTTGGTGACTTCCTTAGTGAGGCTTGGGTGGGAAAGTCCCATGAAAGCTCTGCCCAGACACCCCTCGAATAGAGTCCCCAACTCCCACCTAGAATAACAGAGAAGAACATGGGCATCTGCTGGCCAGTTTAGCATATGCAAATGATTCCTGTCACTGTCCACCTGGATTTCAAGCAGGGACATCAACAAAAGAGAAAAAGCAAAAAGCTACTAGCAATTACTCAATTTGTGCAGGCCCCAATTTTCATAATGTTAATCAAGACCTTGTTGCAACCGTGTATTTATTCAAGCAGTAATAACCAAGACCACAAGGGGCTGATTGCTGCAACCCAGTGCAATCCTTAATCCCCATGCATGGAGGTCATTACAGAGATTACAAACCAGAACTGATGCCAATGCAGGGATTTATTTCTTTTTTAAAAAAATGTGTTGTAGTTTTAATTGATGTAGCATGTCCAACAAAAGGCAGGGCCAGGGAACTAATTCCACTCTTTCTGGCTCTGCCTTTCCCAGGTCTGTGCAGTTTATCAGTCTCATTATGAGGAAAGTGAGCTATTACTGTGGTTGAAATGCCAGTGTGCTTGCTATTTGGTTAGTCTCTGTAGGGACAACTCTGTATATCAAATCAAGGCTAAGAGTTTAGATATAGAAATTTGGAGATTTTCCCTTTTAAATTTATATTGTGCTGTTGAGCACTATACTTATCCTTGTAGATAGATGCTGGCATTTCAAGCTAGAAAAAATTTTCACTAGCTTCCCCCTACTTTCCTGTATTTGGGGATGATGTGTATATCAGTAGTTGAAAAAGAAGGCTTCATGCTTTATTCCTATTTTGTATTTTGATTAAAATTCTTTTTTATTCTCAGTCAGATTTTTTTTTTAGAAGGAAAGGGACACCGTAATTTCTTTCAGGCCCAGCAGCTCTGCTAATTTTGCGTGACTCTGTTCCATCGTCCAAGCATAGGGCATGGATTCCTCAATTTTCTGTAGCGACAGGGCGATGTGGGTGAATGTAAATGTTTCAGAAAGAAAAGGTTATGTGACTCCAACTGCAAGCTAACAATGGCTTCCTTTTCCTTTTGCCAAATGGTTTCCAAGCGTCTCTGAATACACCTGCCCTGCTGGGGAGACTGGCTCGATGGATGGCAGAGCCCCGACCCAGGGTGATGTGGGGACAGGCAGGGAGAGGGCTGGGAAGCAGGAAGGAGCCTGAGATGCTGGGAGGCAGCTGACTTCTTCAGCCATGCTGTGCCAGACCAGAAATGGCCACTAAGATCTGTTCTTCCAAAACACAGACCCCCCTTCTCCAGCACTGTCTCCATATGCTGGGATTAGGAGCTGGGTTCTGTACATGGATTTTCCCCACTGAACTGTTCTCAAATAACAAAATAAACAGTTTAGGATTAGATATACCAGTAGGACCAAAAAAAGGCAGCATAAGTAAAAATCCATCTAGAAAAAGCGCCTCCTTCTAGCTAATACCAGTTCTCATCTTTCTTCCCCGCGTGAACACGAGTAGTTTAGGGTGCTCCAGTGAACAGGGAGCCAAGGCCAACTAGCCCATGGCGATGAGCAGCTTGGACTCTAGGGCTGGACCTGTTCAAATTCCTATGCCACCACTGCCAGCTGAGTGGCCTGTTTGAGCTTCGTTTTCTTTGTGAGACAGGGCCCTCTAGGAGGCAGAGCTCCTGGGCTGTAGCTGGCCTTGGCGGCCTCTCCTCAGCACTGGGATACAGGCAGCAGGGAGAAGTGGAGAGAACCTGGCTTTGGAGCTCGACTAGGAGGGGTCAGGCTCTGTCACTTGCAAGTCACACCAGCCCCCATCCTCAATTTCCTCATCTATAAAAGGAGAAAATGATAAGGACCTCCTAAGGCTGTTATGAGAATTAAATAGAACAGCCACAGGGCAATGTCCAGTACAAAGCCTGGCACACAGTAGGTGCTCGGTGCATGCTGGCTCCCTGTGACCATTCCCATGGAACTTTCTTTCAGTTCCAAGACCTGTGCCTCCGTGACTCCACTTCTCTCCTCCTCCCCCTGCCCCTACCCACATCCTGGGAGAGGTACTGTGGAAGAGTGAAATGGCCAGAATGCAGGCAGAAGAAAAGCAAGCAAACAGGCGAGGCTTATCAGCTGTCTGCTAACCATAGGTTGAGGACAGGGTCAGAGGAATGAAGCAAGGAATTACATTTGGGGACAAGAGTTCTCTGGGATCTCCTGCTCTAAGCACTGTGGGACACAAGCACAATGACTCTATAGGGAGAGTGAAAGGGGGTGCAATGATCACTTATGCCAGAAAAAAAAAGGTATCAACTGGAACATTACTGACACCCACAGTCACCCAGGTGTCAGGTCAGCCTGAGTGCGACAAGAACAGAGGCAGGGAAACTGGCGTCCTGAGGGTTGTGATGGTGGGGGGACTGTAGAAATATCCAGAACCAGCCTACCCCATGGCTTCTGCTTTGGGACACAATAAGACTTTGTCCCTTGCTAGCAGGAGCTTAAGTAAGAGCAGAGGAGCCCATTCAGCAGTTGACGTATTTGACATTCATAATTATACCAACATTGGGGAAGATTTCCCCTTCCACTTACCAGCACAGAACAATGGATAAGTGTTCAGCACTCTTACTAGCTGACCTTCCCTATAATATGGCTCTTCTCTCCCTTTTTTCTTAGGGTAGGAAAAGCCATATTATAGGCAAGGTCACCTAGTAAGAGTTGGCTAACCCTCTACCTAGGAGACAAGAATAAATTAATCAACTCCTTGGTTTTTCTTTCTACTTCTAGCTCTCTGCAGGATGGTTTATTTCTCAAGCTTATTTTCTTATTCCCTTCCCCCATTGCTATGATCTAAATATTTGTGTCCCCTCAAAATTCATATGTTGAAATTCTAACTCCTAAGGTGATGGTATAAGGAGGTGGGACCTTGAGGAGGTGATTATGTCATGAGGGTGGAGCCCTTATGAATGGGATTAGTGCCCTTAGAAAGGAGGCCAGAGGGAGCTCATTTCTTCTTTCACCATATGTGAACACAGCTGGAAGGTGCCATTTATGAACCAGAAAGTGGGCTCTCGCCAGACAATGAATCTGCTAGCCCCCTGACCTTATACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCAGTTGTTTATAAGCTACCCAGTTTATGGTATTTTGCTCTAGCAGCCCAAACAGACTAAAACAGAAGATTGGTACCAGGAGTGGGGTGCTGCTGTAATAAATACCTAAAAATGTGGTAGCAGTCTGGGCACGGCGTCTCACACCTATAATCCCAGCACTTTTGGAGGCCAAGGAGGGCAGATTGCTTGAGCTCAGGAGTTCAAGACCACCCTGGGCAGCATGGCAAAAGCCTGTCTCTCCAAAAAAAAAAAAAAAAAAAAAGAAAGCCAAAATAGCCAGGTGTTGTGGCATGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGATGGGAGGATCACTGGAGCCAGAGAGGTTGAGGCTGCAGTGAGCCACGTTTGTGCCACTGCACTCCAGCCTGGGAGACAGAGCAAGACCCTGTTTCAAAAAAAAAAAAAAATGGTAGCAGCTTTGGGTAATTGGTAGAGGCTGGAAGAGTTTTGAAGTACATTCTAGCAAAAGCCTACATTGTAGTGAATGGACCATTAAGGGTGATTCTGGTGAGGACCAACTACTAATCTATAGAGACAGAGAGCTGCATGTGGCGCCTGCCACGGTAAATTTTGGAAGGGATGCTCAGACCATCATCTCATCGCCTAGACAACTCAGAAAGTAGCAACAATGATGACAGGTAAGAGTGCCAGACAGTCTCATGTGCCAGAAATCAGTGTGGGTCCAGGACACCCTGGAAAGTTTATGTGCACTTATAGTCAAGCCCACCGAGGACTGTTCTAAGACAAGTCATTCCATTCCAGCCCATGAGCATGGATGTCCATAGGTGCTAGGCATAGTAAGTGTGAAAAAGAAAATTAATTCTCTCTCTTTGAGGCTTATCAAGCCACTTACTCACCCGTACTAGATGCCTGGGGCTCACTCTTGATTATTCCCTCATTTCTCATGCCCCATTGCAAAACCACCACGTCCAGCTGTGTGTGTTCTATAAGCTCATCCCTCCCTCTCATGTCTGCAGCTAGTTTAGGCTTTCATCCTCATCACCTCCCTGGACTCCTGCAGCAGTTGCCTGTCTGGCTTCTCTGTTTCTAATCTCAACTTCCTTCAATAATTTCTTCACGCTAGCCAGAAGGAGCTTTCTAAAACACAAATCTGGTGATGTCATTCCCTTGCTTAAAAGCCTTCAAGGGCTCTCCCTGCAGAATAGAAATCCAACTTTTGTTTTGTTTTTAACATGGCTTAAAAGGCCCTCCAAGACCTGTTCTCAACACAAAAGCCAGAGCAATTCTTTTAAAGCAGAAGTCAGATCGTGCGGACTTTTTGTTTTAAACACTCCCTGGGCTCTCCATCTTGCTCAGAGTCAAAGCCAAAGTCTTTACAATGGCTGACGGGCCCTGCTTGTTCTGGCTGCTCTTCTCACTCTGACGTCATCTATTGCTGCCCTCTCCTGCTGTCTCTCTCCAGCCACGTCCCCTACACCCCTTGTAATCCTGGGAGTGCCCAGGTATGTTCCCAACCTAGGGCTGCTGTTCCCTCCTCAAGAGCCACTCTCACCCTAGATAACCACATGGATTTCTTCCTTATCTCAGATGTCTCCTTCCCAAGGAAGTCTTCCCTGACCATCCTATTTAAAATTAGAAACACTTTTCCTTAGCACTTTTTAGAAAAGTATTTCCTGCTCTTTATTTTTCTGCATTAACACTCATCTGACATGAGTTTTACTCATTTATTTTGCTTGTTGTTGGTCTCCCCAGCTAAAATGTAAGTTCCACGAGGCAGAGATTTCTGTTCATTTCACTTGCTGCTAATCCCCAACTCTTAGAACAGTGCCAAGTACATAGAAAGGCATAAATGCGTATTTGTAGAATGAATGGACCTTGCCTGTACCTCCAGCCTCATCTTCAGCCATCTCTTCCCTCTGTAGTCCAGTAACACCTCAGTGTCTGCCCCCCAACCCCACCCAGCTGTTCCTCACCCTCCTGCCTCTGCTCTCTTGTCCTGGATTTCTCTGCCCTTCCCCCACTCTTCCTTTGGCCACTTCTGTTTATCTTTAAAGACCCAGGTTAGACTTAACTGCTTCTAAAAAACTTATGTGATTCCCCTATGCTGGATTCAATGTTCATTTACTGCTCTCCCATTTTATCCTCTATTGACTCACAGTTAAAGAGTATGCTGTAAGTATCGATGCATGTCCCTCTTCTTCAGCAGACTGAGGGCTCCTTGAGGGGCAGGGGCAATTATGTTTTTTAACCCTTTACATCTCAGTTCCTGACATAGTGCTTGGTACCTAGCAGGTGTTTAATTGTGTTGTTGTTGAATGGTTACATGACGTAGTTCTGATACAAGGAAGTTACAGAGTACAACACTTGGAGAATACTACATCAGGACAGCCTCAAAGCTAAATGGTGTCCAGCAGTGGACCCAGCACACACTCGAGCTGAGAGTGGGGTGAGGAGGACTAAAGGCAGGAAGGGGGTCCTGGAAAATGCATGACTTAAGCTGAGACTTAAAGAATGGATATTTAGAGGAATGCAGAGGAAAAGGGAGGTGACTGGTCTTTGAAGAAAAGATATGAAGCTAGCCAAGAGCCAGCCAGGAAATGTTGACAACCACACAGTCCCCAGAGGAGTCCGTAGTGGCACTCTGTATGCCACAGCAATCACAGCCCATATACACAGTGCGTGGGCTGGCCCACAAGCAGCTCTCTCCATTTCCCCCCCGGCCTTTGCCTTAATCAGAGGGAAGCCCACTGGAGCCTGGACCGTTTAGGTGGCCATTCTCTCTGGAGTGTTGAGTTGCTTTGCCTTCCTTTCCTGATCTCTGCTGGAACCCAGTGCCTGGGCACCTGCTCACCTGCCTTTCACTATTACTGTTGTTGGCAG
Seq C2 exon
GTTAATGACCTAGTGACTTCTTTGCCTGTCACCTTAGACTTGGGGACAGTGAAAATCTACCAGAGTGGCATATCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACTTTTGATGGCCAGCACTACGCCTCCATTTCCGTCCCAGGCTCCTATATAAACTCCACCTGTGGACTCTGTGGAAACTATAATAAAAACCCACTGGATGACTTCCTCCGCCCGGATGGCAGGCCGGCCATGTCTGTCCTGGATCTGGGAGAGAGCTGGCGTGTGTACCACGCAGACTGGAAGTGCGACTCCGGCTGCGTCGACAACTGCACCCAGTGCGACGCTGCCACTGAAGCCCTCTACTTTGGCTCTGACTACTGCGGCTTCCTCAACAAGACAGACGGCCCTCTGTGGGAGTGTGGCACTGTCGTGGACCCCACTGCTTTTGTGCACAGCTGCGTGTATGACCTGTGCAGTGTGAGGGACAATGGCACGCTCCTCTGCCAAGCCATCCAGGCCTATGCTCTTGTGTGCCAAGCCCTTGGCATTCCAATTGGAGACTGGCGAACCCAGACTGGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927:ENST00000392793:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.5=37.0),PF0009420=VWD=PU(50.3=57.2)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains