HsaINT0165598 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:120989015-120996581:+
Coord C1 exon
chr11:120989015-120989427
Coord A exon
chr11:120989428-120996010
Coord C2 exon
chr11:120996011-120996581
Length
6583 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTATTACTGTTGTTGGCAGGTT
3' ss Score
6.56
Exon sequences
Seq C1 exon
GACAATTCCTTCGGCGAGGGGAGGTGTTTTGGGATGACTTGAACTGCACCGTCAAGTGCCGCTGTCTGGATTTCAACAATGAGATCTACTGCCAGGAGGCTTCCTGTAGCCCCTACGAGGTGTGCGAACCCAAAGGCAAATTCTTCTACTGCAGCGCTGTGGAGACCAGCACATGCGTGGTGTTTGGGGAGCCACACTACCACACTTTTGACGGCTTCCTCTTCCACTTCCAAGGCTCCTGTGCCTACTTGCTGGCCCGACAGTGTTTGCAGACTTCCAGCCTCCCTTTCTTCAGTGTGGAGGCCAAGAATGAACACCGCAGAGGTTCAGCCGTCTCCTGGGTGAAGGAGCTCTCAGTGGAGGTGAATGGCTACAAGATTCTCATCCCCAAAGGAAGCTATGGAAGAGTCAAG
Seq A exon
GTGAGCCCCTTTCTATCCTTCACGGGGAAATGGAGAAGCTGGAGATTCTTCAGCCTAGGGAAGACTTCCCCAGATCTACTGGTTCTGCTGTTTGTCTCTGTACAGTGCCAAAGAGATGCACAGCTCTCCCCGCCTTGCAAATAGCTTGTAAAATACTTTACTGGGCCAAATTTTATGTGTACAAGAGCTATCCTAAGCTCTCTCCTCAACATGTCTATCTGCTTTTAAACTTAGAGTACATTTATATTCCTAGTTCCCTCATAAACACTGATAGGCACACACACACACACACACACACACACACACACACACACACACACAGTTCAGAAAAACTGGAAAGAGATAAGTTTCTCATGGTCCTGGCTTGCAATAATTGTAGCCACATAGCCATGCCCTGGAGATGGTACAAACACAATACAAACCCCCAATTCACTACAGCCTTTGATTAATAATCCTCACCCCACCTCAGCCCCAATTCTGTTTGCTCAAGAGCTGCTGCTTCATTTTCAGAGAAACCTCCAAATGGATTGATGTCTCCAGAGGTACCACCTGTGCAGGCACCTGGATTGGCTTTGGTGACTTCCTTAGTGAGGCTTGGGTGGGAAAGTCCCATGAAAGCTCTGCCCAGACACCCCTCGAATAGAGTCCCCAACTCCCACCTAGAATAACAGAGAAGAACATGGGCATCTGCTGGCCAGTTTAGCATATGCAAATGATTCCTGTCACTGTCCACCTGGATTTCAAGCAGGGACATCAACAAAAGAGAAAAAGCAAAAAGCTACTAGCAATTACTCAATTTGTGCAGGCCCCAATTTTCATAATGTTAATCAAGACCTTGTTGCAACCGTGTATTTATTCAAGCAGTAATAACCAAGACCACAAGGGGCTGATTGCTGCAACCCAGTGCAATCCTTAATCCCCATGCATGGAGGTCATTACAGAGATTACAAACCAGAACTGATGCCAATGCAGGGATTTATTTCTTTTTTAAAAAAATGTGTTGTAGTTTTAATTGATGTAGCATGTCCAACAAAAGGCAGGGCCAGGGAACTAATTCCACTCTTTCTGGCTCTGCCTTTCCCAGGTCTGTGCAGTTTATCAGTCTCATTATGAGGAAAGTGAGCTATTACTGTGGTTGAAATGCCAGTGTGCTTGCTATTTGGTTAGTCTCTGTAGGGACAACTCTGTATATCAAATCAAGGCTAAGAGTTTAGATATAGAAATTTGGAGATTTTCCCTTTTAAATTTATATTGTGCTGTTGAGCACTATACTTATCCTTGTAGATAGATGCTGGCATTTCAAGCTAGAAAAAATTTTCACTAGCTTCCCCCTACTTTCCTGTATTTGGGGATGATGTGTATATCAGTAGTTGAAAAAGAAGGCTTCATGCTTTATTCCTATTTTGTATTTTGATTAAAATTCTTTTTTATTCTCAGTCAGATTTTTTTTTTAGAAGGAAAGGGACACCGTAATTTCTTTCAGGCCCAGCAGCTCTGCTAATTTTGCGTGACTCTGTTCCATCGTCCAAGCATAGGGCATGGATTCCTCAATTTTCTGTAGCGACAGGGCGATGTGGGTGAATGTAAATGTTTCAGAAAGAAAAGGTTATGTGACTCCAACTGCAAGCTAACAATGGCTTCCTTTTCCTTTTGCCAAATGGTTTCCAAGCGTCTCTGAATACACCTGCCCTGCTGGGGAGACTGGCTCGATGGATGGCAGAGCCCCGACCCAGGGTGATGTGGGGACAGGCAGGGAGAGGGCTGGGAAGCAGGAAGGAGCCTGAGATGCTGGGAGGCAGCTGACTTCTTCAGCCATGCTGTGCCAGACCAGAAATGGCCACTAAGATCTGTTCTTCCAAAACACAGACCCCCCTTCTCCAGCACTGTCTCCATATGCTGGGATTAGGAGCTGGGTTCTGTACATGGATTTTCCCCACTGAACTGTTCTCAAATAACAAAATAAACAGTTTAGGATTAGATATACCAGTAGGACCAAAAAAAGGCAGCATAAGTAAAAATCCATCTAGAAAAAGCGCCTCCTTCTAGCTAATACCAGTTCTCATCTTTCTTCCCCGCGTGAACACGAGTAGTTTAGGGTGCTCCAGTGAACAGGGAGCCAAGGCCAACTAGCCCATGGCGATGAGCAGCTTGGACTCTAGGGCTGGACCTGTTCAAATTCCTATGCCACCACTGCCAGCTGAGTGGCCTGTTTGAGCTTCGTTTTCTTTGTGAGACAGGGCCCTCTAGGAGGCAGAGCTCCTGGGCTGTAGCTGGCCTTGGCGGCCTCTCCTCAGCACTGGGATACAGGCAGCAGGGAGAAGTGGAGAGAACCTGGCTTTGGAGCTCGACTAGGAGGGGTCAGGCTCTGTCACTTGCAAGTCACACCAGCCCCCATCCTCAATTTCCTCATCTATAAAAGGAGAAAATGATAAGGACCTCCTAAGGCTGTTATGAGAATTAAATAGAACAGCCACAGGGCAATGTCCAGTACAAAGCCTGGCACACAGTAGGTGCTCGGTGCATGCTGGCTCCCTGTGACCATTCCCATGGAACTTTCTTTCAGTTCCAAGACCTGTGCCTCCGTGACTCCACTTCTCTCCTCCTCCCCCTGCCCCTACCCACATCCTGGGAGAGGTACTGTGGAAGAGTGAAATGGCCAGAATGCAGGCAGAAGAAAAGCAAGCAAACAGGCGAGGCTTATCAGCTGTCTGCTAACCATAGGTTGAGGACAGGGTCAGAGGAATGAAGCAAGGAATTACATTTGGGGACAAGAGTTCTCTGGGATCTCCTGCTCTAAGCACTGTGGGACACAAGCACAATGACTCTATAGGGAGAGTGAAAGGGGGTGCAATGATCACTTATGCCAGAAAAAAAAAGGTATCAACTGGAACATTACTGACACCCACAGTCACCCAGGTGTCAGGTCAGCCTGAGTGCGACAAGAACAGAGGCAGGGAAACTGGCGTCCTGAGGGTTGTGATGGTGGGGGGACTGTAGAAATATCCAGAACCAGCCTACCCCATGGCTTCTGCTTTGGGACACAATAAGACTTTGTCCCTTGCTAGCAGGAGCTTAAGTAAGAGCAGAGGAGCCCATTCAGCAGTTGACGTATTTGACATTCATAATTATACCAACATTGGGGAAGATTTCCCCTTCCACTTACCAGCACAGAACAATGGATAAGTGTTCAGCACTCTTACTAGCTGACCTTCCCTATAATATGGCTCTTCTCTCCCTTTTTTCTTAGGGTAGGAAAAGCCATATTATAGGCAAGGTCACCTAGTAAGAGTTGGCTAACCCTCTACCTAGGAGACAAGAATAAATTAATCAACTCCTTGGTTTTTCTTTCTACTTCTAGCTCTCTGCAGGATGGTTTATTTCTCAAGCTTATTTTCTTATTCCCTTCCCCCATTGCTATGATCTAAATATTTGTGTCCCCTCAAAATTCATATGTTGAAATTCTAACTCCTAAGGTGATGGTATAAGGAGGTGGGACCTTGAGGAGGTGATTATGTCATGAGGGTGGAGCCCTTATGAATGGGATTAGTGCCCTTAGAAAGGAGGCCAGAGGGAGCTCATTTCTTCTTTCACCATATGTGAACACAGCTGGAAGGTGCCATTTATGAACCAGAAAGTGGGCTCTCGCCAGACAATGAATCTGCTAGCCCCCTGACCTTATACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCAGTTGTTTATAAGCTACCCAGTTTATGGTATTTTGCTCTAGCAGCCCAAACAGACTAAAACAGAAGATTGGTACCAGGAGTGGGGTGCTGCTGTAATAAATACCTAAAAATGTGGTAGCAGTCTGGGCACGGCGTCTCACACCTATAATCCCAGCACTTTTGGAGGCCAAGGAGGGCAGATTGCTTGAGCTCAGGAGTTCAAGACCACCCTGGGCAGCATGGCAAAAGCCTGTCTCTCCAAAAAAAAAAAAAAAAAAAAAGAAAGCCAAAATAGCCAGGTGTTGTGGCATGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGATGGGAGGATCACTGGAGCCAGAGAGGTTGAGGCTGCAGTGAGCCACGTTTGTGCCACTGCACTCCAGCCTGGGAGACAGAGCAAGACCCTGTTTCAAAAAAAAAAAAAAATGGTAGCAGCTTTGGGTAATTGGTAGAGGCTGGAAGAGTTTTGAAGTACATTCTAGCAAAAGCCTACATTGTAGTGAATGGACCATTAAGGGTGATTCTGGTGAGGACCAACTACTAATCTATAGAGACAGAGAGCTGCATGTGGCGCCTGCCACGGTAAATTTTGGAAGGGATGCTCAGACCATCATCTCATCGCCTAGACAACTCAGAAAGTAGCAACAATGATGACAGGTAAGAGTGCCAGACAGTCTCATGTGCCAGAAATCAGTGTGGGTCCAGGACACCCTGGAAAGTTTATGTGCACTTATAGTCAAGCCCACCGAGGACTGTTCTAAGACAAGTCATTCCATTCCAGCCCATGAGCATGGATGTCCATAGGTGCTAGGCATAGTAAGTGTGAAAAAGAAAATTAATTCTCTCTCTTTGAGGCTTATCAAGCCACTTACTCACCCGTACTAGATGCCTGGGGCTCACTCTTGATTATTCCCTCATTTCTCATGCCCCATTGCAAAACCACCACGTCCAGCTGTGTGTGTTCTATAAGCTCATCCCTCCCTCTCATGTCTGCAGCTAGTTTAGGCTTTCATCCTCATCACCTCCCTGGACTCCTGCAGCAGTTGCCTGTCTGGCTTCTCTGTTTCTAATCTCAACTTCCTTCAATAATTTCTTCACGCTAGCCAGAAGGAGCTTTCTAAAACACAAATCTGGTGATGTCATTCCCTTGCTTAAAAGCCTTCAAGGGCTCTCCCTGCAGAATAGAAATCCAACTTTTGTTTTGTTTTTAACATGGCTTAAAAGGCCCTCCAAGACCTGTTCTCAACACAAAAGCCAGAGCAATTCTTTTAAAGCAGAAGTCAGATCGTGCGGACTTTTTGTTTTAAACACTCCCTGGGCTCTCCATCTTGCTCAGAGTCAAAGCCAAAGTCTTTACAATGGCTGACGGGCCCTGCTTGTTCTGGCTGCTCTTCTCACTCTGACGTCATCTATTGCTGCCCTCTCCTGCTGTCTCTCTCCAGCCACGTCCCCTACACCCCTTGTAATCCTGGGAGTGCCCAGGTATGTTCCCAACCTAGGGCTGCTGTTCCCTCCTCAAGAGCCACTCTCACCCTAGATAACCACATGGATTTCTTCCTTATCTCAGATGTCTCCTTCCCAAGGAAGTCTTCCCTGACCATCCTATTTAAAATTAGAAACACTTTTCCTTAGCACTTTTTAGAAAAGTATTTCCTGCTCTTTATTTTTCTGCATTAACACTCATCTGACATGAGTTTTACTCATTTATTTTGCTTGTTGTTGGTCTCCCCAGCTAAAATGTAAGTTCCACGAGGCAGAGATTTCTGTTCATTTCACTTGCTGCTAATCCCCAACTCTTAGAACAGTGCCAAGTACATAGAAAGGCATAAATGCGTATTTGTAGAATGAATGGACCTTGCCTGTACCTCCAGCCTCATCTTCAGCCATCTCTTCCCTCTGTAGTCCAGTAACACCTCAGTGTCTGCCCCCCAACCCCACCCAGCTGTTCCTCACCCTCCTGCCTCTGCTCTCTTGTCCTGGATTTCTCTGCCCTTCCCCCACTCTTCCTTTGGCCACTTCTGTTTATCTTTAAAGACCCAGGTTAGACTTAACTGCTTCTAAAAAACTTATGTGATTCCCCTATGCTGGATTCAATGTTCATTTACTGCTCTCCCATTTTATCCTCTATTGACTCACAGTTAAAGAGTATGCTGTAAGTATCGATGCATGTCCCTCTTCTTCAGCAGACTGAGGGCTCCTTGAGGGGCAGGGGCAATTATGTTTTTTAACCCTTTACATCTCAGTTCCTGACATAGTGCTTGGTACCTAGCAGGTGTTTAATTGTGTTGTTGTTGAATGGTTACATGACGTAGTTCTGATACAAGGAAGTTACAGAGTACAACACTTGGAGAATACTACATCAGGACAGCCTCAAAGCTAAATGGTGTCCAGCAGTGGACCCAGCACACACTCGAGCTGAGAGTGGGGTGAGGAGGACTAAAGGCAGGAAGGGGGTCCTGGAAAATGCATGACTTAAGCTGAGACTTAAAGAATGGATATTTAGAGGAATGCAGAGGAAAAGGGAGGTGACTGGTCTTTGAAGAAAAGATATGAAGCTAGCCAAGAGCCAGCCAGGAAATGTTGACAACCACACAGTCCCCAGAGGAGTCCGTAGTGGCACTCTGTATGCCACAGCAATCACAGCCCATATACACAGTGCGTGGGCTGGCCCACAAGCAGCTCTCTCCATTTCCCCCCCGGCCTTTGCCTTAATCAGAGGGAAGCCCACTGGAGCCTGGACCGTTTAGGTGGCCATTCTCTCTGGAGTGTTGAGTTGCTTTGCCTTCCTTTCCTGATCTCTGCTGGAACCCAGTGCCTGGGCACCTGCTCACCTGCCTTTCACTATTACTGTTGTTGGCAG
Seq C2 exon
GTTAATGACCTAGTGACTTCTTTGCCTGTCACCTTAGACTTGGGGACAGTGAAAATCTACCAGAGTGGCATATCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACTTTTGATGGCCAGCACTACGCCTCCATTTCCGTCCCAGGCTCCTATATAAACTCCACCTGTGGACTCTGTGGAAACTATAATAAAAACCCACTGGATGACTTCCTCCGCCCGGATGGCAGGCCGGCCATGTCTGTCCTGGATCTGGGAGAGAGCTGGCGTGTGTACCACGCAGACTGGAAGTGCGACTCCGGCTGCGTCGACAACTGCACCCAGTGCGACGCTGCCACTGAAGCCCTCTACTTTGGCTCTGACTACTGCGGCTTCCTCAACAAGACAGACGGCCCTCTGTGGGAGTGTGGCACTGTCGTGGACCCCACTGCTTTTGTGCACAGCTGCGTGTATGACCTGTGCAGTGTGAGGGACAATGGCACGCTCCTCTGCCAAGCCATCCAGGCCTATGCTCTTGTGTGCCAAGCCCTTGGCATTCCAATTGGAGACTGGCGAACCCAGACTGGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.5=37.0),PF0009420=VWD=PU(50.3=57.2)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)