HsaEX7005834 @ hg38
Exon Skipping
Gene
ENSG00000246273 | SBF2-AS1
Description
SBF2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27438]
Coordinates
chr11:9775645-9780831:+
Coord C1 exon
chr11:9775645-9775765
Coord A exon
chr11:9779817-9779942
Coord C2 exon
chr11:9780376-9780831
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGATAATCTTTTTCCATCAGAAT
3' ss Score
5.09
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
TGCCTCTGGGTTGGTGAACACATCAGATGCTGGGCAGGTGGTGTGTTGCCTCCCTCCATACCATGCATCTCTTCCCTTTGGCTGATCCTGAGGTGTATCCCTTAGAAATAAGCTGGTAAAT
Seq A exon
AATAATGCTGTGTGCTCCCTCTTTGCCTGCTACTGAACAATGACGTCTCTTGTTGTGAACCCCACTGGCAGAGCACGGACCATGGAAGCATCTTTTGGCAGCACCAGAGAACTGAGCATCTCAAAG
Seq C2 exon
CATGAGTTCTTCTGTTTCTTCTGCGTGGGTTGACCATGGGCATCAGGCATCAGAGATACAACTCTGGATCTTGTCCATCCATTGCTGGGCACTCTGTCCATCCTGGGCGCAGAAGTTATACACACGTTTGCTGGTCTTGAGCTACAAAACCAAATGACAGTGAACCAGAGATGAAGGGCAGGGCTGTTTTATGGATTTGGGTAAGTGGTAAATCAGTTCCTGTGACCTTTCTTTTCCATACTGCCCCAGAACGTCTGTATGAATTTTTCTTCCTCAACTACCATACTGTTATTGCCTTTACTTTTGTGGTCTCTAGAGTCATAGGGGATGTTGATAGAAGGGTACTGGCAGGAAAGGGAGACACACTGGGAGCGCCTTATTTTGCATTTTCTTAGTGTCGTCTTTGACTAAGGAGGAAGGGTCAGCAATGAATGGTGCCTTTAACCTTTCCCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000246273-'1-8,'1-5,2-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACATCAGATGCTGGGCAG
R:
TCAAGACCAGCAAACGTGTGT
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains