HsaEX7005833 @ hg38
Exon Skipping
Gene
ENSG00000246273 | SBF2-AS1
Description
SBF2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27438]
Coordinates
chr11:9779817-9809284:+
Coord C1 exon
chr11:9779817-9779942
Coord A exon
chr11:9780376-9780575
Coord C2 exon
chr11:9807848-9809284
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTATCTATCTGGCAGCAT
3' ss Score
7.32
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AATAATGCTGTGTGCTCCCTCTTTGCCTGCTACTGAACAATGACGTCTCTTGTTGTGAACCCCACTGGCAGAGCACGGACCATGGAAGCATCTTTTGGCAGCACCAGAGAACTGAGCATCTCAAAG
Seq A exon
CATGAGTTCTTCTGTTTCTTCTGCGTGGGTTGACCATGGGCATCAGGCATCAGAGATACAACTCTGGATCTTGTCCATCCATTGCTGGGCACTCTGTCCATCCTGGGCGCAGAAGTTATACACACGTTTGCTGGTCTTGAGCTACAAAACCAAATGACAGTGAACCAGAGATGAAGGGCAGGGCTGTTTTATGGATTTGG
Seq C2 exon
GAGTCTACTGCTAAGATTTCAGCATGTCCTGTGGCTGAGTTAATCAGAGTTATGACAGGAAGGTACCGGGCACACCATCGCAATGCTCCATCAATGCTAGTATGTTGTGTTCTTTCCTTCATATCAAGTCAACTCAAGCTTGCTCTACTTACCTGGTGTACACAGTCTAAGAACTGTAAGAAGACTGGAGCAAAACCACTCCCCTGACAGTTGAGGGTCAAGCTGCTCCTCTGACTGAATTTGTGACCAAAAGAGAGCCACTCTTTTTCAACCAACATCTGGAAGCCTTCAAGTGTCCTATAAAAGGGATCACTGAGTAACTGAACCAGGGATGTCACCTAGGGCATAAGCAGGATGGATTGTCATTAATTTTAGTTCTGAAAAAGGCCTATTACTAAGATAAAAGCACTTCCTTCTGATGATAGCTAATTCACAAATTTACCTGGACAGCAAATTTGTTCACTAACCATTCCAGGATGGCCAATAAAATTAATTTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000246273-'2-18,'2-8,3-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTCTTGTTGTGAACCCC
R:
TCAACTGTCAGGGGAGTGGTT
Band lengths:
298-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains