HsaEX7005832 @ hg38
Exon Skipping
Gene
ENSG00000246273 | SBF2-AS1
Description
SBF2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27438]
Coordinates
chr11:9780376-9791244:+
Coord C1 exon
chr11:9780376-9780575
Coord A exon
chr11:9783040-9783109
Coord C2 exon
chr11:9790869-9791244
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCTCTCCTCTCAGGCA
3' ss Score
12.19
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CATGAGTTCTTCTGTTTCTTCTGCGTGGGTTGACCATGGGCATCAGGCATCAGAGATACAACTCTGGATCTTGTCCATCCATTGCTGGGCACTCTGTCCATCCTGGGCGCAGAAGTTATACACACGTTTGCTGGTCTTGAGCTACAAAACCAAATGACAGTGAACCAGAGATGAAGGGCAGGGCTGTTTTATGGATTTGG
Seq A exon
GCATGGTATGAGCAGGGCTAAGTGGAAAAAACTGTATCTATCTTTCATGTTAAAGAAGTCCAGAAGACTG
Seq C2 exon
GGAAACAGATCCAGATGGAGGAAACATCTGATAAAGTTTGCCTAAGCAGCCAGCAGTCTATCAATCATGACTCTTCCAACCCTCATCCTGCATCTATATCTAGATTCAAAGAAGTCCATGCAGGAGGCAGTCTACACTTTTCAAGAGAAAATGGAAGGACTTCAGAGTTGATTTGATGAAGCTCAGTAAAAAACATAATTTTATGTTTCTCTTTTAAGTTGTTGGCTGTTTGTTTATTATGAAGCCATTTAAAGAGTTTTCTTGTTTAGCAGTGTATATATACTGCAGATCATGGTTACTGAGACTCTAGATGACAGAAGCGTGTAGTCTGTGTCCTTGGGTGACTTAAAAATAAAAGCAGAACTTTTATACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000246273-'5-18,'5-13,6-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGATTTCACTTTTGGATTGAGA
R:
CACAACATACTAGCATTGATGGAGC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains