HsaEX0056310 @ hg38
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:9790556-9808185:-
Coord C1 exon
chr11:9808000-9808185
Coord A exon
chr11:9795831-9795957
Coord C2 exon
chr11:9790556-9790683
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTTGTGTGTTTCAGGTT
3' ss Score
12.94
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GTGACATCCCTGGTTCAGTTACTCAGTGATCCCTTTTATAGGACACTTGAAGGCTTCCAGATGTTGGTTGAAAAAGAGTGGCTCTCTTTTGGTCACAAATTCAGTCAGAGGAGCAGCTTGACCCTCAACTGTCAGGGGAGTGGTTTTGCTCCAGTCTTCTTACAGTTCTTAGACTGTGTACACCAG
Seq A exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACTTAAAGTTCTTGGCTTTCCACTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGATTAGAGCACG
Seq C2 exon
GAACTTTATTTGATGATAAAGGAGAAAAGCATGCCAAAAAAGGAGTCTGTATTTGGGAATGTATTGACAGAATGCACAAGAGGAGTCCCATTTTCTTTAATTATTTATATTCACCATTGGAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812_MULTIEX4-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(14.1=100)
A:
PF066029=Myotub-related=PD(9.5=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACTTGAAGGCTTCCAG
R:
GAAAATGGGACTCCTCTTGTGCA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development