GgaEX1050924 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8638343-8647389:+
Coord C1 exon
chr5:8638343-8638528
Coord A exon
chr5:8645680-8645806
Coord C2 exon
chr5:8647262-8647389
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTGTTTATTTTTAGATT
3' ss Score
11.53
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTAGTATCTCTGGTACAGTTACTCAGCGATCCCTTCTATAGAACACTTGAAGGCTTCCGAATGCTGGTGGAAAAAGAATGGCTCTCTTTTGGTCATAAATTCAGTCAGCGAAGTAATTTGACTCTAAATTGTCAGGGTAGTGGATTTGCACCTATTTTCTTACAGTTCTTAGACTGTGTGCATCAG
Seq A exon
ATTCATAACCAATATCCCACAGAGTTTGAGTTCAATCAGTATTACCTGAAGTTCCTAGCTTTTCATCACATATCAAATCGATTTAAAACATTTCTTCTGGATTCAGACTATGAAAGACTAGAACATG
Seq C2 exon
GGACACTGTTTGAAGATAAAGGAGATAAACATAACAAAAAAGGAGTTTGTATTTGGGAATGTATTGAAAAGATGCACAAGAGGAGCCCTATTTTCTTCAATTACCTCTATGCTCCCACTGAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'55-66,'55-65,56-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(13.2=100)
A:
PF066029=Myotub-related=PD(8.9=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCGAATGCTGGTGGAAA
R:
TTTCAGTGGGAGCATAGAGGT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]