RnoEX0078178 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174956017-174970687:-
Coord C1 exon
chr1:174970502-174970687
Coord A exon
chr1:174961496-174961622
Coord C2 exon
chr1:174956017-174956250
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTGTATATTTCAGGTT
3' ss Score
11.18
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTGACATCCCTAGTCCAGCTACTCAGTGATCCCTTCTACAGGACAATAGAAGGCTTCCGGATGTTGGTTGAAAAAGAATGGCTCTCTTTTGGTCATAAGTTCAGCCAGCGCAGCAGCCTGGCCCTTAACTCTCAGGGCAGTGGTTTTGCTCCCATCTTCTTGCAGTTCTTAGACTGCGTGCACCAG
Seq A exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACCTAAAGTTCTTGGCTTTCCATTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGACTAGAGCATG
Seq C2 exon
GCTCTGAAGCCTAATGTAAATGTCTCCAGCCTAAAGAAGTGGGATTACTACACAGAAGAGACCCTGTCTGCAGGTCCTTCATACGACTGGATGATGCTGACCCCCAAGCATTTTCCCTACGAGGAGTCAGATGTAGCTGGAGGAGCTGGGCCCCAGAGTCAGAGGAAAACAGTGTGGCCATGCTATGATGATGTGACCTGCAGCCAGCCAGATGCCCTCACAAGACTTTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812_MULTIEX2-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(13.3=100)
A:
PF066029=Myotub-related=PD(9.0=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCTTCCGGATGTTGGTT
R:
AAAATGCTTGGGGGTCAGCAT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]