MmuEX6013147 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117460410-117473460:-
Coord C1 exon
chr7:117473275-117473460
Coord A exon
chr7:117464187-117464313
Coord C2 exon
chr7:117460410-117460537
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTGTATATTTCAGGTT
3' ss Score
11.18
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTGACATCCCTGGCACAGCTACTCAGTGACCCCTTCTACAGGACAATCGCAGGCTTCCGGACGCTGGTGGAGAAGGAATGGCTCTCTTTTGGTCATAAGTTCAGCCAGCGCAGCAGCTTGGCCCTTAACTCTCAGGGCGGTGGCTTTGCTCCCATCTTCTTGCAGTTCTTAGACTGTGTGCACCAG
Seq A exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACCTAAAGTTCTTGGCTTTCCATTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGACTAGAACATG
Seq C2 exon
GAACTTTATTTGATGATAAAGGTGACAAACATGCCAAGAAAGGAGTTTGTATCTGGGAGTGTATTGACAAGATGCACACACGGAGTCCCATTTTCTTCAATTACTTATACTCACCGGTGGAAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'51-54,'51-53,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(13.3=100)
A:
PF066029=Myotub-related=PD(9.0=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTACTCAGTGACCCCT
R:
CTCCGTGTGTGCATCTTGTCA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: