BtaEX0031432 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43448556-43474836:+
Coord C1 exon
chr15:43448556-43448741
Coord A exon
chr15:43469795-43469921
Coord C2 exon
chr15:43474732-43474836
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCTTGTGTGTTTCAGGTT
3' ss Score
12.94
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GTGACCTCCCTGGTTCAGTTACTCAGTGATCCCTTTTATAGGACGCTTGAAGGCTTCCGGATGCTGGTCGAAAAAGAGTGGCTCTCTTTTGGTCATAAATTCAGTCAGCGGAGCAGCTTGACCCTCAGCTGTCAGGGCAGTGGTTTCACTCCGGTCTTCCTACAGTTCTTAGATTGTGTACACCAG
Seq A exon
GTTCACAACCAGTATCCAACTGAGTTTGAATTCAATCTCTATTACTTAAAGTTCTTGGCTTTCCACTATGTGTCTAATCGCTTTAAAACATTTCTCCTGGATTCAGACTATGAAAGATTAGAGCACG
Seq C2 exon
GAAATTGAAAGACTGGAGCATAAATTGAACCAAACCCCTGAGAAGTGGCAGCAGCTGTGGGAGCGGGTAAACGTGGACCTTAAAGAAGAGCCCAGAGCAGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981_MULTIEX2-3/9=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.257
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(14.1=100)
A:
PF066029=Myotub-related=PD(9.5=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAAGGCTTCCGGATGCTG
R:
GGTCTGCTCTGGGCTCTTCTT
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development