HsaEX7006333 @ hg38
Exon Skipping
Gene
ENSG00000255274 | TMPRSS4-AS1
Description
TMPRSS4 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44179]
Coordinates
chr11:118013704-118015809:-
Coord C1 exon
chr11:118015693-118015809
Coord A exon
chr11:118014708-118014741
Coord C2 exon
chr11:118013704-118013880
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGATTGTCTTCCTAGGGC
3' ss Score
7.94
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTGAGGACTCCATCAGCACCTTGGGCCTGATCCTTGGCGTGGGGCTCTTGCTGCTGCTCGTGTCCATCCTCGGCTACAGCCTGGCCAAGTGGTACCAGCGCGGGTACTGCTGGGAGG
Seq A exon
GGCCTAATTTTGTCTTCAACTTATATCAAATCCG
Seq C2 exon
GAACCTGAAGGATCTGGAGATGGGTCCACCCTTCACCATCAGTGGTCACATCAGCAGCACAGATGGTGGCTACATGAAGTTCTCCAACGGGCTAGTCTGATGCAGAGACAGCAACTTGTGAAGCCCTGGGGAGGTGAGTTGGAGTTGGGAGAGCTGCCGAGTGAGCCTGATGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000255274-'10-11,'10-9,12-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCCTGGCCAAGTGGTA
R:
CACCATCTGTGCTGCTGATGT
Band lengths:
112-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains