MmuEX0038249 @ mm10
Exon Skipping
Gene
ENSMUSG00000091996 | BC049352
Description
cDNA sequence BC049352 [Source:MGI Symbol;Acc:MGI:3040681]
Coordinates
chr9:45241393-45244287:+
Coord C1 exon
chr9:45241393-45241509
Coord A exon
chr9:45242967-45243000
Coord C2 exon
chr9:45244159-45244287
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGGTTGTCTTCCCAGGGC
3' ss Score
8.85
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTGACGACTCCATCAGCACACTGGGCATGATCCTTGGAGTGGGACTGTCACTGCTGCTCGTGTCCATCCTAGGCTACAGTTTGGCCAAGTGGTACCAGCGCGGGTACTGCTGGGATG
Seq A exon
GGCCTAACTTTGTCTTCAACTTATATCAAATCCG
Seq C2 exon
GAACCTGAAGGACTTGGAGGTTGGCCCACCCTTCACCATCAGTGGCCACATGAGCAGCCCGGATGGTGGCTACATGAAGTTCTCCAATGACAGAGTCTGATGGAGCAGTGACTAGCTTCTGAAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091996_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGTTTGGCCAAGTGGT
R:
CTTCATGTAGCCACCATCCGG
Band lengths:
124-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types