RnoEX6035522 @ rn6
Exon Skipping
Gene
ENSRNOG00000047939 | Smim35
Description
small integral membrane protein 35 [Source:RGD Symbol;Acc:7587328]
Coordinates
chr8:49544858-49547418:+
Coord C1 exon
chr8:49544858-49544978
Coord A exon
chr8:49546241-49546274
Coord C2 exon
chr8:49547319-49547418
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTTCGGGTTGTCTTCCCAGGGC
3' ss Score
8.77
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCAGGCGAAGACTCTATCAGCACACTGGGCATGATCCTTGGAGTGGGACTGTCATTGCTGCTCGTGTCCATCCTAGGCTACAGTTTGGCCAAGTGGTACCAGCGCGGGTACTGCTGGGACG
Seq A exon
GGCCTAACTTTGTCTTCAACTTATACCAAATCCG
Seq C2 exon
GAACCTGAAGGATTTGGAGGTGGGGCCACCCTTCACCATCAGCGGCCACATGAGCAGTCCAGATGGTGGCTACATGAGGTTCTCCAATGAAAGAGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047939-'1-6,'1-4,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGTTTGGCCAAGTGGT
R:
CCACCATCTGGACTGCTCATG
Band lengths:
114-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]