HsaEX7008603 @ hg38
Exon Skipping
Gene
ENSG00000117971 | CHRNB4
Description
cholinergic receptor nicotinic beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1964]
Coordinates
chr15:78655544-78660532:-
Coord C1 exon
chr15:78660512-78660532
Coord A exon
chr15:78658280-78658369
Coord C2 exon
chr15:78655544-78655663
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTATTATCTCTGCGTTCTAGGAC
3' ss Score
10.89
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGACCTGATGGGAAAGCAGAG
Seq A exon
GACTGAGCCAAGGCCCAGGTGATATAGAAATAAACAAGAGGCTAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTGGGAAGGCCAAG
Seq C2 exon
GGTCTCGCTCTGTTGCTCGAGCTGGAGTGTGGTAGCACCATCGTGGCTCACTGCAGCCTTGACCTCCCCTGGATCAAGCGATCCTCCTACCTCAGCCTCCCAAGTGGCTGGGACCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117971-'9-12,'9-8,10-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGATGGGAAAGCAGAG
R:
CTATTGGTCCCAGCCACTTGG
Band lengths:
141-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains