HsaEX7009261 @ hg38
Exon Skipping
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr17:19411630-19413408:+
Coord C1 exon
chr17:19411630-19411670
Coord A exon
chr17:19412498-19412783
Coord C2 exon
chr17:19412938-19413408
Length
286 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTTTTGCCCCACAGGTC
3' ss Score
11.92
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGAGAAAACAGAGCTTCATGGGAAACAGCGGCAACAGTTG
Seq A exon
GTCCCATACACCTTTCCCCAAGTTGGAGCTAGGCCTGGGGCCCCAGCCCATGGCGCCCCGGGAGCTCCCTACCTGCTCCATCTGCCTGGAGAGGTTGCGCGACCCCATCTCGCTGGACTGTGGCCACGACTTCTGCATACGGTGCTTCAGCACACACCGTCTCCCGGGCTGTGAGCCGCCCTGCTGTCCTGAGTGCCGGAAGATATGCAAGCAGAAGAGGGGCCTCCGGAGCCTGGGCGAGAAGATGAAGCTCCTGCCGCAGCGGCCGCTGCCCCCTGCACTGCAG
Seq C2 exon
GAGACGTGTCCTGTGAGGGCGGAGCCGCTGCTGCTGGTTCGCATCAATGCCTCTGGGGGCCTCATCCTTAGGATGGGGGCCATCAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACCCCAGTCTGCCTCCTCGCTGTCCTGGGGGAGCAGCACTCAGGGAAGTCCTTCCTCCTCAACCATTTGCTTCAGGGCTTGCCGGGCCTGGTGAGGGCGGGGCGGGGCAGGAGGGAGGCGGGGAGCAAGGATGGGGGTTCCTGCCTGGGGGAAGCTGGGTCTGGTATTCCGGTCTGTGGGGACAAGGAACCGACCAACTGATGCTCTCCCTTCTCTCCCCTGCAGGAGTCTGGTGAGGGCGGCCGGCCAAGAGGAGGAGAGGCATCCCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGGGCATATGGATGTGGAGCCACCCCTTCTTGCTGGGGAAAGAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-'5-6,'5-4,8-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009720=zf-C3HC4=WD(100=42.7)
C2:
PF0226314=GBP=PU(19.0=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAGCGGCAACAGTTG
R:
CGGAATACCAGACCCAGCTTC
Band lengths:
308-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains