RnoEX6047623 @ rn6
Exon Skipping
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47722883-47724301:-
Coord C1 exon
chr10:47724261-47724301
Coord A exon
chr10:47723233-47723518
Coord C2 exon
chr10:47722883-47723089
Length
286 bp
Sequences
Splice sites
3' ss Seq
GATGATGTCCTGCCCTCCAGGTC
3' ss Score
9.68
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGAGCAAACGAAGCTTCATGGGAAACAGCAGCAACAGTTG
Seq A exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACAGCGTCCCTCCCCACCCCGGGAGTCGCCTACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCTATCTCACTGGACTGTGGCCACGACTTCTGCATCCGATGCTTCAGCACACATCGCATCCCAGGCTGTGAGCTGCCATGCTGTCCTGAATGCCGGAAAATCTGTAAGCAAAAGAAGGGCCTTCGCAGTCTAGGGGAGAGGATGAAGCTCCTACCTCAGCGGCCGCTGCCCCCTGCACTGCAG
Seq C2 exon
GAGACCTGTGCTGTGAGAGCGGAGCGTCTGCTGTTGGTACGCATCAATGCCTCTGGAGGCCTCATCCTCAGGATGGGAGCCATAAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACACCTGTCTGCTTGCTTGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTCTTGGACCACTTGCTCAGAGGCTTACCAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364-'8-10,'8-6,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF152271=zf-C3HC4_4=WD(100=42.7)
C2:
PF0226314=GBP=PU(18.9=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACGAAGCTTCATGGGA
R:
AGGCCTGGTAAGCCTCTGAG
Band lengths:
244-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]