HsaEX7009426 @ hg38
Exon Skipping
Gene
ENSG00000233101 | HOXB-AS3
Description
HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
Coordinates
chr17:48592292-48604046:+
Coord C1 exon
chr17:48592292-48592364
Coord A exon
chr17:48600447-48600545
Coord C2 exon
chr17:48603927-48604046
Length
99 bp
Sequences
Splice sites
3' ss Seq
AATTAACCTCACCTCTGCAGGTT
3' ss Score
7.46
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGAACCAGATCTTGATCTGGCGCTCGGACAGGCAGAGTGCGTGGGCGATCTCGATGCGCCGTCGCCGGGTCAG
Seq A exon
GTTGCTTGTCTGGAGATGGAGCCACTACAGGCGGGCCTGGGCGCCTGGAGTCGGGCATGAAAGAAAATAGCGCCTCATCGCTCTTATCTAAGCCCAGAG
Seq C2 exon
CCGTTTCCTCTCCCTCGCCGGCCTCGGCGGAGATTCCAGGCCCTATAGAAACCAGGACGTCCCTTAGCGCCACCGCCTCACATGCCAGTGCTGCCGGGAACCCAGCGATATCCGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233101-'4-22,'4-16,13-22=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCTTGATCTGGCGCTCG
R:
GGATATCGCTGGGTTCCCGG
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains