HsaINT1015851 @ hg38
Intron Retention
Gene
ENSG00000108511 | HOXB6
Description
homeobox B6 [Source:HGNC Symbol;Acc:HGNC:5117]
Coordinates
chr17:48597736-48604992:-
Coord C1 exon
chr17:48604480-48604992
Coord A exon
chr17:48598261-48604479
Coord C2 exon
chr17:48597736-48598260
Length
6219 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACCTCGCCATCCCCCCTCAGCTA
3' ss Score
6.85
Exon sequences
Seq C1 exon
TAATGCAGCATTCTTTTGGACACCACACCTAGGTCGGAGCACTGTCGTCCTTCAGGGCTCCAGCCTCTTGATATTTTTGTACTTCAGTATCAGCTCGATAGAGCAAAAGAGAGAGAGGACGAGAGAGGGGGGTGAGGAGAAAAGAGAGAGAGCGCGAGAGGGAGAGGGAGAGAAGGAGGGGTGGGAATTACACAAAGAGAGAACCAAAAATAATTTTGATTCCTAAGTTAATTTGCTCACTGATCTGGGATTTTAGTCACCATGGAGGGTAAATGGACAATCTGCCCAGGACTGCAGCCCGATACTATTTTTCAAAGCCAGAACTTACTCCATTTTCTATGCAAATGTCAGAAAAATGAAACACCCTCTCTCCCAAGTCAGAGAAGGGGAAGCAACGGCTCTCACGTTGGGACAATATTATCTGGAAGCTGAAGAAGAAACTGAATACTCCTTCCTTCCTCCCCACCCATTCCTTTAAATCCGGAGGGGGAAAAAATCCCAAGGTCTGCAAAG
Seq A exon
GTAAGGGAGATTCTACAATTTTCTTCTTGTTCTTTTGCATCGCTTTTGTAGGGTGGGGGTGGGGCTTGGGTTTTTCTCCCTCCTCCCCCGTTCCAAGACGGGGCTGAACCCCACCTCTGGGCGCTGCAGGGAGAAGCTTCCCAGGAAATTCAGTGGTGGAGATATGGGTGGCTGCTTCCTGGAGGGGGAGCCAAGGCAGGGAAAGCGGGAAGAGGAATCAAAAGAGGGCCAGGAGACCAGCTCTAAGTCGCCTTTTTAAGCTTGGAGGAGAGACTCAAGCAAGGGGGGTGCGAAAGAGAGGATGGGGGGTATCTGGGCTTCAGTGGCACCCAAAGAAGCCAGTGGTTCTGGCCTCCGCGGGCTTGCCCCTCCCCCTCCTGCCATCCCTCCCTTGTCTCGGCCTCTGGCTATTGCCCCAGCGCAGTTCTCTTGCCTGGTGCGGATATCGCTGGGTTCCCGGCAGCACTGGCATGTGAGGCGGTGGCGCTAAGGGACGTCCTGGTTTCTATAGGGCCTGGAATCTCCGCCGAGGCCGGCGAGGGAGAGGAAACGGCTAGAGAAACACAGAAAAGACAATTTACAGAGAAATGTTTACTATCTCCCTTCGGAGACATTTTTGAAATTAAAGGGCTGTGGGTGGAAACACCAAAAATGAGGGAGACTCCCCCCTCACCAGGAAGCCTGCCCGAGAATGCCCAAGTATCTCGCCACTCCCGCAGGAGGGAGCCTCGCTCTACAGGGAGACAGTTTTGTGGTTTTAATGCGGTAGGTTACAGCTGTTGGTTTCTGCGTGATACTGATTCTATTACTTGCGTTGTATTGGTATGGGATGTGTGGATTTCGGTGGAGGAAAAAATTGCCATGTGTGTGTCTGATATGATAACATTTCAAACTTTCCTGGGTCCAGACATGGTGATTGTGAAGAAGCTGTTAAGTGCCTTTTTGTTTTAGGCTTGTAAATAAAAATAAAAGAGAAAGAAATGAAAGAAGAAAATAAAAAGAAAATCCAATTATGGGACCTAGCGGCGTCTAAACTGAAAAGCTAACTGGCACTGAGCTCAGACAGTCCCGTCCCTCGGGTGTCCAATTTTATCCCTCAGTCAGGCCTTCTAGGGGGTGGGGAGGGCGGAGAACATTGGGCAGGTGACAGAGATTCCTAAAGTAGCTCGTGGGGTGGAAGTAGGTGCCAGCCTTGAGGCAAGGACTTAAAAATGGGGTAAGGGAGCTTCTGGGGAAGCTTCCAGCCAAGAGATAAGTGATGTTGGCTGTGGAGGGCAGGAGAAATTGTGATTTTTAGTCTGGTTTGCACGAACATGTGATTGCTTTTCTCTTTCTTAAGACCAGATGCAGGACATTCAGCCTCGGGCCTCTGGTTGCCCCGGAGTTACAGGGTCTGGGGCGTTTTGGAAGTGGGGATATATTTATTATCTCAGTCCTAAGCTAGGAGAGGGACGACGCTGCCACTTGTGGCGCGGAAGAGGCGGCTCTGTGGCCCCAGGTAGATGCCCTAGGTTCAGGCCCGGCCTGGGCGCCTGGAGGGACCGCTGGGCTTCGTAGCTAGAGTTCTCCGCCAGCACCCACGGCACTCGGGGACTATTCTCAAGGGAAAAATTTCCCAAACCCACCCATACTAAAGGTCTTTTTCTCCTGTAGTCTTGGAGGGTTATAAATCCTCCCTTAGACAGTTCGCTGTGACCCAAATTATGCGGTCTGCTGCCATCTACCGTCCGTTCGGAGACACGCGGCTTCGGCGCCGCAAGCCCCGCGACACTGTCCAGAGGTGCCCGACGCCTGGAGCCCCGGCCTCGCAGGGTCCACGGGATTCGGGGGATTTCGGGCCCACACCGACGCTCTCAGCTAGATCTTGGTTCCCCGGTGTGAGTTAGAGAACAGAAGTCTCTCCTCCACCCATCATCCCCAATTTCCCACTGCCCCCGTCCCCGCCCATCCTAGCCCCAAACCTGGCGGCTGGCAAGGGAAGCGGCTTCCTCTAGGGCATATATAAAAAGGTCTAATTCTGCTTCCAGCGGGCAGGGGCCCTGAATCAAAGGGTGGAGGGATCAGAGCCGACACCCCCACCGCCATCCCCACCCCCACCCCACCAAGGCGCGGGAGAGGATGAGGCCGCTTGAGACATCCGAAGCCAAGGCTGTTCAAGGTTTATTTGGTTTTCTTCTCAGCCAAGGGAGGGGACCCGCAGGGCAGGCGCCGGCCCCGTCAGTTCCACTCGGTTGTCAAAAGACAAACCGGGTCTGTGTTCTCCTGGTTGGTTAGTGGGTTTTGCCAGCTCCTTGGTTGGTGGGTCCGTGGTGAAGGAATTGAACCGAATTTTCTGGAAACTGTTGATGTCTGCAAGTGAGTGCCGATCCCCTCCTCCATTCTCGATCTTTTCAAGCGAAGTCTACCTAAATATGATTTGGGAAAAATTTGGTAGTGGGACTGGGGCCAAATCCTTAAGGAACCACACCGTCGTAATTTCCGTTCCTGTTGGACCCTCCACACCGGCTTAACTCGACCTCCTTCCCAAGAGGGGGTGGCCAGGGCTAGGCTATGCGCCTCTGCTGCAGCGTTTGAATATTGGCCCCTGTCTCACGGGTTACTGATTAGCTTGGGCTTTCAAGCCGTAGGAGGAAGCTCTGGCAGTTCCTTTAAAGGTGCTGTGGTCCCCGTTCCTGGGTGGGGGTGGGGTTCCAGGAAATTGCCTGCGGTGCCAGGCAAACCAAGGTGTTGCCAGAGTCTGGCCGAGGGCTAGAGGAGCTGACGAGGTTAAGGGGCCTGGTGGTGCTGGGGACAAACACTGTGGCTGCAGCCCTCACCCTCTTTCGGCGCCTCTGGAGCAGCTCTTTATAGCTTTCCTGCGGCGAGGTGACTTTCTGGTGGCTATAAGGCCCGACTCAAGGAGCTGCTCTATAGGAGGCCCTGAGGGAGCCAGCCCTAGAAGGTCCTTGGCCCCTCTGAGATTTTGCTTTTGGGCAATCCAAAGGACATGTAGAGAAGTCAAGCTGGTACATGGTATTGAAACACTTCAGGGCCCTCAGGTTGTCCCCTGGACCTGCGGGTAGGAAACCGGGAGAGTGGGTTCAGCACTACTGCTCACTCCCCTAAAGATCAAAGAGGATGCCGCTCCTTTGCATAATGAAAATGAAGTCTTTGTACTTTGATTTGGAGGGGCCGATTTTAGGGCAAAGTGTCTCATCTAAACAGCCTCCCTCAACCTATGGGAGTGATCACTCAGTACCCCTGGGAACATTTATTTATGTTCCCCAAACCCAGAGAAACAGAGTCCAGGACGAGAATTGAGTTGAAATATTTTCATCCCACCCCACCCCAGCCAAAGTTGGGGGTGGTGGGAGAAGGTGCTCATCACCTCAAAGAGCTGAGGGAGAGGGCTTTATAGCTTAGAGGAAATTGGAAGCCTGGACAATGTCTCAGCACCCTCCCACACACACCACACCACACCACACACACACACACACACACACACACACGCAAATATCCCTCCTGAGGTTACCTATCAAGAATTTTACTCCCGAACTGAACACAACTTAGGAAACATTTTCCTGGGAGCTGGAATGTGTTAGCTTGCCCACAGGACTGCAGACTCACAGCATAGAAAATTACAATTATAAATCCTGCCTGTGGGGTATCTGTACAATCCCTCTGTTATGTACTCAAGAATTGGTACACACTTCTATCCATCTCTCTGAACACACACTTCCTCATTGAGGCAGGGAGAGACACCCCAGACTGGCGGATGGCTGAGCCCGCTGTGTATTTACATATTCCCCCAAGGAGACAGACAGAGGGCGGTGGACCGAACCACAGACAGATTCGTAGGGATCTGGCTCCAGAAAGGAGTCGGTCTCTGGCCTGCCCTGCCCGCCTGCTCTTTTTCCCAAACAAACGGATCAGACGAATAAACGCTCATAAATACCTCTGGGCTTAGATAAGAGCGATGAGGCGCTATTTTCTTTCATGCCCGACTCCAGGCGCCCAGGCCCGCCTGTAGTGGCTCCATCTCCAGACAAGCAACCTGCAGAGGTGAGGTTAATTTGGGGGCTGTGACTCTAAAGATAAGGCAATTATTTCCCTGCTTCTGACACAGGGAAATGCTCCCTTCCTCACCAGATCTTATTTTGTTCAGACTTCACTGAGAAAACCACACTATTTAGTGCTAGGATGGAGACATTGTGGGCAGGGAGGAGGCAGGGAAGGCTGAGGCCCAGGGCTCAGCCTCAGCAGTAGGCAGGGAGGTGCATGCAGGTACTCTCTCCCACTTTTCTCCCCCTGTTCAAATGGCCCCTAGTCCTCTCTAGAAGCAAGCCCAGCCATACCTAGATATGGAATATTTATCCTTCTTCATTATCAGGGGGTTTAAATTTGTTTTCTTAAATGCTTATCAAACACTCCCACAGAGTCAGGTTAGGAAGTAATTGGAGGCCATCTAGGGATGGCTATTTTGCCATTAAGGTACAGCCAAGAAGTTGCCCTGAGTTTAGAGAGCCTTGGAGACCACGTTGCAACCAAATAAGTTCCCACCCTTGGTGATCCAAGCTCAGTCCCCTGCCACCTTCCCTAGTGTCTTGTACCATCTTCAGTGGGCAGAACTTGGCCAGAAAAAGGAGCCCAAAGGAAGGACAAGGCAGAGGAGGGTCAGCCTGGCCTGACATCTGACTTTGTTCCATGCCCTGGCCCCTTCTTGTCCCCAGGTGTGAAGGTTGTCACCCTTCACTACTTGGCCTGTGTATGTATATTAGAATGTTGGGAATGCACTGTGGCCCTGTCTCCCAGCCTGGGCTCAATGCTTATTTTCCTTGGATGAAAGAGCCAGAGACATACATTCTCTGACACACCTAAATTTGTAAGGCGGCAAAGCTGATGATACAAACACGGGGTGTGGGAGGGAATTGTAGCGATGCTGAGATACAGACAGAAGGGAGAGGGGATGCTGGCTGATGGCTGGAAGCAGCCTGCTGAGTCCCCAAGAGAACGCAAACGACCTTCTCTCCCTATCAAACTAAAGCAAAAACCAAGTCTTGGGAAAGAATTAATTTTAAAAAGAACTGGCAGCTCCTACAGAGACTTAGAAGAGGAGTGAGGATGCATTTCTTCCCAGTGGTCTCTGACTGCCTCAACTATCAGGAGGGTTCAAAGCCCACAACTGGAAGAAGAATGATTTCTTCCTTGTGCCCAGATTTACTGGGACATCCCTGATTCCTGAAAATCCTATAGCCCAGGCTATTCTTAAGTCTTTTGGGATTGTAGAGGGTACTGGAGTGAGGGTTGCAGGCAGGATAGGGATCAGACAAATAAAGCCACCTAGGCTGAGGGATACCCCTCACTCCTTCACTCCATATCACCAAGTGAGGAGAGGGCTAGTCCCTTTCCCCAGTGCCCCTTCCCCTGCCAAGGGTGAGCAGCTGCATACTAGAACCAGGCAGAATGTTTTGGGCAGCCACCCTCGTCGCCGCCTTCCAAGAAGCTCCTAGTCTAGCCACAGAGTCAGAAGGGGAAGCTTGGGCTCAGTCCCTCCTGCCAGCTCCTCCTCTTCTGGGTCTTCTAGGCAGTGGGATCTGGCCTGCCCCCTCAGACCAGAAGGGTTGTGGAGAAGCAGGAACAATAAGCCGAGGCTTGGAGGAGACAGAGCAGATCTGATAAACAGGAAAAACGATGTTCAAAACCTGGGGAGGAGGGTGTTTCTTCTTTGCTTATCTTAGCGGAGAACTCTTCTCACCTTCTACCGACACAAAACCCTAGAAACAAACCTTCTTTAGTTCTCTCTCAAGGCGATTCGGAGACATTTACCCAACCCTCCCCGGAGAGAAGGGGTCGAAGCAACGCAGGGGTTAACTTTTCTGAAAACACAATTAACTTTTTCCAATCCTGCGTGGGGTGGGGGAGAGACATATTTATTTAATCACCCGGGAGTGGGGTGGTCTCAATCTAAACGTTCCCTCCTCCCTCAAAGGCACTGAGCCTGTTTCACAGATCCTACGTAGGTGGAACAGGACGCGTTGTGTTGTTGGGGGGAGAGAGGAGAAAGGCGAAGGAGAAGGAGGAAAAAAAAAAAGGTTGATAGGTTTGTGCGCGGGTCCCTCGTGCGGGCTGCGCTCCTCCTGGGTGCTATTTGACAATTCCTGCCTCTGCCATTGGTCAGTGTTGGATCAGATGGTTGTATTTCCTTCTGGCCCTCACTGGCACCTCGCCATCCCCCCTCAG
Seq C2 exon
CTAAAACCCAATCTCGGATATACTACTAATAGGCGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCGGAGCAGCAGCGGCCGCGCGCGCCTCCCCTCCCAATGAGTTCCTATTTCGTGAACTCCACCTTCCCCGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGGCCAGCTACCGCTCTATTCGTCGGGCTATGCGGACCCGCTGAGACATTACCCCGCGCCCTACGGGCCAGGGCCGGGCCAGGACAAGGGCTTTGCCACTTCCTCCTATTACCCGCCGGCGGGCGGTGGCTACGGCCGAGCGGCGCCCTGCGACTACGGGCCGGCGCCGGCCTTCTACCGCGAGAAAGAGTCGGCCTGCGCACTCTCCGGCGCCGACGAGCAGCCCCCGTTCCACCCCGAGCCGCGGAAGTCGGACTGCGCGCAGGACAAGAGCGTGTTCGGCGAGACAGAAGAGCAGAAGTGCTCCACTCCGGTCTACCCGTGGATGCAGCGGATGAATTCGTGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108511:ENST00000484302:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.302
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains