HsaEX7009538 @ hg38
Exon Skipping
Gene
ENSG00000108984 | MAP2K6
Description
mitogen-activated protein kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6846]
Coordinates
chr17:69502266-69505846:+
Coord C1 exon
chr17:69502266-69502417
Coord A exon
chr17:69504459-69504579
Coord C2 exon
chr17:69505780-69505846
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTAATTTATTGTATTTTTAGTAG
3' ss Score
3.79
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
CTGTTTCTCCTTGCCGAAGTGTGGTCTTTGGAGCTAAGTGAAGAATGACTTCTGTTAGGTTTTCCTCTGCTGGTCTTCCTTGCAGCCTCGAAAACCTCACCAGAGTCGCCTCTGCTGGTCTCTTACTGTGCTGCTCTGTCAGAGATGGGCAA
Seq A exon
TAGAGACAGGATTTCACCGTGTCGGCCAGGATGGTCTCCATCTCCTGACCTCGTGATTCGCCCGTCTCGGCCTCCCAAAGTGCTGGGACTACAGGCATGAGCCACCGCGCCTGGGCAGAAG
Seq C2 exon
GCAAGAAGCGAAACCCTGGCCTTAAAATTCCAAAAGAAGCATTTGAACAACCTCAGACCAGTTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108984-'7-15,'7-12,8-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.986
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000590474fB19404
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCTTTGCAGCTTCAGGA
R:
GTGGAACTGGTCTGAGGTTGT
Band lengths:
165-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains