HsaEX7010357 @ hg38
Exon Skipping
Gene
ENSG00000186529 | CYP4F3
Description
cytochrome P450 family 4 subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:2646]
Coordinates
chr19:15640897-15644051:+
Coord C1 exon
chr19:15640897-15640945
Coord A exon
chr19:15641415-15641613
Coord C2 exon
chr19:15643907-15644051
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCACCCCATCTGCCCTGCAGGAT
3' ss Score
9.56
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGAAGAAGGGGAGAGGAGGTTGTGTGGGACAAGGTGCTCCTGACAGAAG
Seq A exon
GATGCCACAGCTGAGCCTGTCCTCGCTGGGCCTTTGGCCAATGGCAGCATCCCCGTGGCTGCTCCTGCTGCTGGTTGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATACCTTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCGAAACGGAATTGGTTCTTGGGTCACCTGGGCCTG
Seq C2 exon
GTCACCCCCACGGAGCAGGGCATGAGGGTCCTGACTCAGCTGGTGGCCACCTACCCCCAGGGCTTTAAGGTCTGGATGGGCCCCATCTTCCCCGTCATCCGTTTTTGCCACCCCAACATCATCCGGTCTGTCATCAACGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186529-'1-3,'1-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGGGAGAGGAGGTTG
R:
CTGAGGCGTTGATGACAGACC
Band lengths:
194-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains