MmuEX7034614 @ mm10
Exon Skipping
Gene
ENSMUSG00000062464 | Cyp4f37
Description
cytochrome P450, family 4, subfamily f, polypeptide 37 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32621319-32625266:+
Coord C1 exon
chr17:32621319-32621350
Coord A exon
chr17:32621691-32621892
Coord C2 exon
chr17:32625122-32625266
Length
202 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTCTGTATGCTCAGCAG
3' ss Score
3.49
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTCTTAGAGGATCAGCAGCTCCTGAGATAAG
Seq A exon
CAGGATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTGGGCTCTGTGGTGACCTTGTCATGGCATCTTCTGCTGCTTGGAGCGGCATCTTGGATTTTGGCCAGAATCCTTGCCTGGACTTACTCATTCTGTGAGAACTGCTCCCGCCTCAGATGTTTCCCTCAGCCTCCTAAAAGAAACTGGTTTTTGGGTCACTTGGGCATG
Seq C2 exon
ATTGAGCACAATGAGGAAGGCATGCAGCTGATGACTGAAGCAGGCCAGACTTACCGAGATGTCCATCTCTGTTGGCTGGGACCAGTGATCCCTGTGCTGAGGATTGTTGACCCTGCATTTGTTGCCCCCCTGCTCCTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-'0-8,'0-0,1-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGATCAGCAGCTCCTGA
R:
CTGAGGCCAGGAGCAGGG
Band lengths:
172-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types