HsaEX7010502 @ hg38
Exon Skipping
Gene
ENSG00000245680 | ZNF585B
Description
zinc finger protein 585B [Source:HGNC Symbol;Acc:HGNC:30948]
Coordinates
chr19:37198939-37207254:-
Coord C1 exon
chr19:37207040-37207254
Coord A exon
chr19:37199400-37199497
Coord C2 exon
chr19:37198939-37199054
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGGTCTCACTCTATCCTCAGGCT
3' ss Score
8.3
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GTTCTTGGGTGTCTCTGGGGAGTCCCTGGGCCAGACCTTCCTCCAGACTCCAGCCCACCTCTTCGGAGCAGCTCTGCTGAGTTCACAGATGACCACTAAACTTCAGGCACCCTAGACAAAAAGGGTTGAGATCCAGTGTGGCCATGCCAGCTAGTTGGACCTCACCCCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG
Seq A exon
GCTGGAGTGCTGTGGTGCAATCACGGCTCACTGTAGCCTGGACTTCCCAGGTTCAATCGATCCCCCCACCTTAGCCTGCCGAGTAGCTGGGACTACAG
Seq C2 exon
GTATATAGGTACCATTTTCAAAGAAATGATGTTCTGAGCCCTATAAGCACAATCAATATGCATCACAAGAGACAAACTGTAATCTCTGAATGCAGTTAAATGAAGAAATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245680-'13-8,'13-6,21-8=AN
Average complexity
A_C2
Mappability confidence:
94%=91=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTAAACTTCAGGCACCC
R:
TGTGCTTATAGGGCTCAGAACA
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains