HsaEX7108879 @ hg38
Exon Skipping
Gene
ENSG00000245680 | ZNF585B
Description
zinc finger protein 585B [Source:HGNC Symbol;Acc:HGNC:30948]
Coordinates
chr19:37190024-37199497:-
Coord C1 exon
chr19:37199400-37199497
Coord A exon
chr19:37198939-37199054
Coord C2 exon
chr19:37190024-37190150
Length
116 bp
Sequences
Splice sites
3' ss Seq
AACATGTATATTCTTTTCAGGTA
3' ss Score
8.58
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GCTGGAGTGCTGTGGTGCAATCACGGCTCACTGTAGCCTGGACTTCCCAGGTTCAATCGATCCCCCCACCTTAGCCTGCCGAGTAGCTGGGACTACAG
Seq A exon
GTATATAGGTACCATTTTCAAAGAAATGATGTTCTGAGCCCTATAAGCACAATCAATATGCATCACAAGAGACAAACTGTAATCTCTGAATGCAGTTAAATGAAGAAATCAACAAG
Seq C2 exon
GGATCAGTGTCCTTCAGGGATGTGGCTATCGATTTCAGCAGAGAGGAATGGCGGCACCTGGACCTTTCTCAGAGAAACCTGTACCGGGATGTGATGCTGGAGACCTACAGCCACCTGCTCTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245680-'21-13,'21-8,22-13=AN
Average complexity
A_C1
Mappability confidence:
91%=75=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTGCTGTGGTGCAAT
R:
TGGCTGTAGGTCTCCAGCATC
Band lengths:
210-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains