HsaEX7010664 @ hg38
Exon Skipping
Gene
ENSG00000170954 | ZNF415
Description
zinc finger protein 415 [Source:HGNC Symbol;Acc:HGNC:20636]
Coordinates
chr19:53116313-53122743:-
Coord C1 exon
chr19:53122662-53122743
Coord A exon
chr19:53122404-53122616
Coord C2 exon
chr19:53116313-53116433
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTCCCTCTTTTCAGAAA
3' ss Score
11.73
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
CATTGACTTCCAAAGACTCCTGGCACATGAGGAAGAAACCCAGAAGAGGAGAGCAAAGGAGTCAGGAATGGCTTTTACTCAG
Seq A exon
AAAGGTGGGAGACAATGCCTTGGAGCTGCAAATCTTCTCTGAGTCTGAAGCATCCTGCCTGACGCGTTTGCTCACATTGACCCGTGCCTTCCCTCAGTCCTTCTCATCTCTACTGAGATTCCGTCTCACCCTGACCCTGTGACATGAACTTCTGAAGAGTCCACTGGGCATGGTCCTGGGAAGGGCTCACACCCAGACATGGATGGAGACGGG
Seq C2 exon
TTGACATTCAGGGACGTGGCCATCGAATTCTCTCAAGATGAGTGGAAATGCCTGAACTCTACACAGAGGACTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170954-'7-12,'7-9,8-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCCAAAGACTCCTGGC
R:
GGAGACCAGGTTCCTGTAGTTCT
Band lengths:
196-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains