HsaEX7010715 @ hg38
Exon Skipping
Gene
ENSG00000204514 | ZNF814
Description
zinc finger protein 814 [Source:HGNC Symbol;Acc:HGNC:33258]
Coordinates
chr19:57876916-57888958:-
Coord C1 exon
chr19:57888767-57888958
Coord A exon
chr19:57885883-57885969
Coord C2 exon
chr19:57876916-57877042
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTTTGAGAAGGAG
3' ss Score
2.81
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
CGGGGAGCAGTTGTCCTCCGCTGCACAGAGGCTACTCTGGAGCTCTGTGACGGCGCCCAGCGTGACCCACTCCTGGGCCAGGATACGGACCGTCGTGCCCATATCTCCTGGCTGGTCGCCCTATCCTCCCGACTCTGCTTAAAACCACGTGGTTCGATGGCTGCCGCGGCTACGCTGAGGCTCTCCGCTCAG
Seq A exon
GAGTCTCACTCTGTCATCCAGACTGGAGTGCAGTGGCGTGATCACAGCTCACCACAACCTCCGCCTACAGGAGATATTTTGATACAG
Seq C2 exon
GGCACAGTGACTTTTGAAGATGTGGCTGTGAACTTTACCTGGGAGGAATGGAATCTCCTTAGTGAGGCTCAGAGATGCCTGTACCGTGATGTGACGCTGGAGAACCTGGCACTTATATCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204514-'1-5,'1-0,2-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.724 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=WD(100=69.0)
C2:
PF0135222=KRAB=PU(95.1=90.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACTCACGTGAGGACCCT
R:
CAGGTTCTCCAGCGTCACATC
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains