HsaEX7101776 @ hg38
Exon Skipping
Gene
ENSG00000189180 | ZNF33A
Description
zinc finger protein 33A [Source:HGNC Symbol;Acc:HGNC:13096]
Coordinates
chr10:38012298-38017015:+
Coord C1 exon
chr10:38012298-38012350
Coord A exon
chr10:38015967-38016045
Coord C2 exon
chr10:38016871-38017015
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTCCCATTTTCACAGCAG
3' ss Score
6.26
5' ss Seq
GAGGTTTCA
5' ss Score
-4.4
Exon sequences
Seq C1 exon
CTGTATCTTCAGAGTTGTCTCCGTCTTTCCAAGAACAGAACAAAATGAACAAG
Seq A exon
CAGTGATCCCTAAAAGATGTGCCCTAGAGGATATCCAGAACAATCCAATTGGATGTCTTCTCCGCTGTACTCCACAGAG
Seq C2 exon
GTAGAACAGAAGTCCCAGGAGTCAGTATCATTTAAAGATGTGACTGTGGGCTTCACCCAGGAGGAGTGGCAGCACCTGGACCCTAGTCAGAGGGCTCTGTATAGAGATGTGATGCTGGAGAACTACAGCAACCTTGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189180-'6-5,'6-2,7-5=AN
Average complexity
A_S
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.186 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=83.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTTGTCTCCGTCTTTCCA
R:
GGTTGCTGTAGTTCTCCAGCA
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains