HsaINT1047407 @ hg38
Intron Retention
Gene
ENSG00000189180 | ZNF33A
Description
zinc finger protein 33A [Source:HGNC Symbol;Acc:HGNC:13096]
Coordinates
chr10:38012298-38017015:+
Coord C1 exon
chr10:38012298-38012350
Coord A exon
chr10:38012351-38016870
Coord C2 exon
chr10:38016871-38017015
Length
4520 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CCTAATTCTGAATGTTTCAGGTA
3' ss Score
7.99
Exon sequences
Seq C1 exon
CTGTATCTTCAGAGTTGTCTCCGTCTTTCCAAGAACAGAACAAAATGAACAAG
Seq A exon
GTAAGTTGTTTATTAATTCCCTACTTTATTTTGCAGTGGACTTTGTGAGATTTGTAAGAGTCGATATGGTGTTTGTTTTTTTTTTTTTTTTTTTTTTGTGAGACGGAGTCTCACTCTGTCACCCAGGCTGGAGTACAATGTCCCCATCTCGGTTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCCCCCGAGTAGCTGGGACTGCAGGCGCATGCTGCCACGCCTGGCTAATTTTTTGCGTTTTAATAGAGACAGGGTTTCACCGTGTTGCCTAGGCTGGTCGCAAACTCCTGAGCTCAGTCAATCCGCCCGCCTTGGTCTCCCAAAGTGCTGGGATTACAAGCGTGAGGCACCGTGTCTGGCCAAGAGTCAATATGTTAAGATGAGAAGTTAGTAATAGATAAAAATTGAACTTCCCAGAAAATATAAAGTAACAGATCAATAGCAGGGCCAAGTTAGAGTCAATAAGTTGAGCTTCGTATGTTTCTTACGTTTCCAACAACCATGGCAGAAAGGAAGACACTGGATACAGACAGACTGACTCCTCTGAAGGCACAAAGACTTCCTGGCAGATACCTTTTTTGGTCATAACATAGGGACCCATAGTGAATAAGCTTCCAGTGATAACCCTGAAATGAGTGCAGCCTATTGAGTCAAACTGCTTTTTTAATTTTTATTTCACACAGGTTCCAGTTTTCTTTTGGATGTAGTGTTTGATCAGTAAATTAAAATGTATTTTAATTTTAATTTTTTTATTTTTTTGAGACGGAATCTTGCTCTCTTGCCATTCTGGAGTACAGTGGCGCGATCTTGGCTCACTGAAACTTCTGCCTCCCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTACCGTGTTGGCCAGGATGGTCTTGATATCTTGACCTCGTGATCTGCTCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCGGTAAATTAAAATGTATTTTATTATTATTATTTTTTTTGATACAGAGTCTTGCTCTGTCACCAGGCTGTAGCACAGTGGTGTGATCTTGGCTCACTGCAACCTCCGACTCCCTGGTTCAAGTGATTCTCCTGCCTCGACTCCTTGGTTAAAGTGATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGATTATAGGCACGCACCACCATACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAGTCTCCTGACCTCGTGATCCCCCACCTTGGCCTCCCAAAGTGCTAGGATTGTGTATTTTAATTTTTAATGAATCTTATTTCTACATGTGTAGCAGATAGATACACAACCCCCTAAATTTTAAATATAGAACTTAATGAATTATTACAAATCCGTGGCACAAATAATGAATACACAGGTCAAAACAAACATTGCCAGCACTCCTGAAGCTGCCGTCTTGTCCCCCTCACAATCCTGACACCTCCCTGCTCATTCATTCATTTACATATAAGCCACAGTATCTGGCTTCAGTGGCAGAGTTGAATAGTTGTGACAGGAACATTTTGGCCTGCAAAGCCCCAAATTTAATGATGTCTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGAGTCTCACTGTCACCCAGGCTAGGGTGCAGTGTGCGATCTTGGCTCACTGCAGCCTCTGCCTTCAGGGCCCAAGGGATTCTCCTGGCTAAGTCTCCCAAGTAGCTGAAATTACAGGCACGCGCCATCACACCTGGCTAATTTTGTATTTTAGTAGAGACAGGGTTTTACTTGGCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGCACTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCAAATATTTAATGTCTGATTTTTTACAGAAGAAGTTTACCAATCCCTAGATTAGTTTATTACGTTTATTTGTTGCTGGTGTGTACTAGTCTAGATGACTTTTCCTACTTCAAGGTTATGAAGATACTCTTGTTACCTTTTAAAATATTTCTTGTTTTGGCATTCACATTTACATCTCTTTCATTGGAATGAGTGTCTACTTCTGTATGAGGTAGATGTCAGATTCCTTTTTTCATGTGGTTAATGTAGAATTATTTTTGAAAACACCATCCTTTCCCCACTGTTTTACATTGTGATATTTGTCATCAATTATGTGTACATATATGTCTGTGTGTTTTTTGGGCTATGTTCTGTTGGTTGGTTGTGCCAGTACCACACTTGGTGAAACATCTTAGCGTCTAGTAGCTGGTTTAACACATTTTTTCTTCAGCAAGATCCTGGCTCTTCCTAGTTCCTTGCATTTCCATACAAATATTGTTAGTATTAATAAAATAACTTGCTGAGACTTTCTTTGGGGTTGAATTGAACCTATATATAAATTTGGGAAGAATTACTTACCTTTTTTTTTGAGACAGAGTCGCCCAGGCTGGAGTGCAGTGGTACGATCTCAGCTTATGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGGAATTGGAATTACAGGCACCTGCCACCACACCTGGCTAATGTTTTTGTATTTTTAGTAGAGACACGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGAGCCACCTGCCTTGACCTCCCAAAGTACTAGGATTATAGATGTGAGCCACTGTGCCTGGCCTCCAATTCCATTCTTGATTATTTTCTTTCCCCAGTTTTCTGACAACCTTCTGATTTTCTCTTGATGGCTTTGAACACCACTATATTATAAATGTCTTTGTAGTCCTTGTTTCATTCTTGATCTTCATATTATGCTTCATTTTTTTTTGAGTTGGAGTTTTGCTCTTGTTACCCAGGCTGGAGTGTAGTGGTGCTGACCTTGGCTCACTGCAACGTCTGCCTCCCAGGTTAAAGGGATTCTCCTGTCTCAGCCTGGTGTCTCAGCGGGTGTCTCAGCTGGGATTACAGACACCCGCCAACACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATTTTTGTCAGGCTGGTCTCTTAACTCCTGAGCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACCATGCCAAGCCTATGCTTCAAATTTAATATAATTAGGATGTTTCTTACTAGAATACTGTGTCCAACCTATATAGCCCTAACTTTCCTGGTTTACATTGTGGCCCTAGTATCTGGGCAGCTGTGCATGGAGATAGCCAGAGGAAACATTTTTTTTCTTAATGAATTGGTGACCACATTTTGTTGTTCTTGCCTCCTATTATCCGTGCCCTATTTGCATCCTGGTTTCTTCTACAGTAGTTTATGTAAATGTTGTTTTGTCCTTTGTCGTTCTCAGTAGAATTGGTTCTGTAAACGAAACCTGGTCCTGTAATTTCAGTATATGCTCATATCTCATCTTTGGCTCTCCCATTTTCACAGCAGTGATCCCTAAAAGATGTGCCCTAGAGGATATCCAGAACAATCCAATTGGATGTCTTCTCCGCTGTACTCCACAGAGGTTTCAAATATAATGGTTCCAAAATCTTTCCATTTTCTACACATCCTTATTATTGTCTCTGAATTAAAGGATTAGAACCCAGAATATGTATTGCGATGAAGAAAATGTCAGGCTCTTTTTCTACATTTTTAAATCCAAATGAGAGTTAAATTAGAATTCATAATGAATGTACTGACAATTTATTTCTGTGATTTGTAAATATAAATCTGTAGTTCTCAGTAATATTCTTGAAAATGGTAAATGATCAAATACTTTGGAGACCATTGGTCTAAAATTACTCTATAACCCATTTCCTTGGCTTTTTTTCTCAAGACAGCACCAGGCCATCTCCTGTGCTGTCTGCCATTTTGTTGATGTCTGCAGTGTGTTGGAGGCCCTCACCTTTGCTTGTATCATGGCCCTATGCTTATGAAGAACGTAATAGAGTGTTTTTCATAATTCAACCAACAGCTGTACTTCCTCAGTTAAGCTCAAAACAGAGCCAACTTTGCTCCTAATGTTAGTCTACTGTGTTTGTACTTTCACCTTAGTACTTGTAACATATTACCACACATATTTTCTTACCACTCTGTGTGTTCTTTGAACACAGGAAGATTTTTATTAATCTTAGTATTTCCAGCAGTGATGATAGTTCCAGGTACTTTGTAGGAACTTGATAATTTCTTTTGCATGAATTAATATCTTAATGCATTAATGGCAGAATATTTCTGTTATGATTTCTTTTTCCCTAAAAGTATAAAACAAAACAATATTCTGTGAATAATAATCATGGTAAGGATTAGCCCATACTTCTTTTTTCATGCCACCTAATTCTGAATGTTTCAG
Seq C2 exon
GTAGAACAGAAGTCCCAGGAGTCAGTATCATTTAAAGATGTGACTGTGGGCTTCACCCAGGAGGAGTGGCAGCACCTGGACCCTAGTCAGAGGGCTCTGTATAGAGATGTGATGCTGGAGAACTACAGCAACCTTGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189180:ENST00000458705:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=83.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains